Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    25   0.29 
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.1  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 25.0 bits (52), Expect = 0.29
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 214 VITDNDIATQLLRHNDVARTDEDGHLVEG 300
           +I  +D+  QLL  NDV+ TDE  +   G
Sbjct: 184 LIIYDDLRDQLLMPNDVSITDEPAYQYRG 212


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -1

Query: 372 NVHCAAPGGSGD 337
           ++HCAA GGS +
Sbjct: 332 SLHCAAVGGSAN 343


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 311 VGPEPSTRCPSSSVRATSLWRSN 243
           + P+P    PS++  +TS   SN
Sbjct: 417 INPQPQITSPSNTNTSTSSTNSN 439



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 320  PLKRTASPDPPGAA 361
            PLK TA P P G++
Sbjct: 1105 PLKGTAVPPPSGSS 1118


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,240
Number of Sequences: 336
Number of extensions: 1175
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)