Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c...    44   9e-06
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    28   0.49 
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   6.0  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.0  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   6.0  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    24   7.9  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   7.9  

>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 680

 Score = 44.0 bits (99), Expect = 9e-06
 Identities = 31/101 (30%), Positives = 44/101 (43%)
 Frame = +2

Query: 11  DGLDIKLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXXPPAP 190
           D L++  K+R    S  G  R+L+ RP    +   +Y                       
Sbjct: 573 DPLNMSRKDR--ELSLPGDYRKLLVRPENMEFNFIKYDNMEQQLILTDKDRLENRSISVS 630

Query: 191 QEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALL 313
            E GK+ A+ L   LP S YATM LRE ++T T+S  Q +L
Sbjct: 631 SEVGKHTAVTLKFVLPSSAYATMALREALRTATASGDQRML 671


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 401 FNYKTFIIYVTFIARPREGRGTPSSSADERVGPEPSTRCPSSSVRATS 258
           +N K     V  ++RP+    TP S+A     P P    P   V A S
Sbjct: 60  YNIKEQDFIVCMVSRPKTSTSTPKSAASP--APNPPASVPEKKVEAPS 105


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -3

Query: 262 HHCGVATGWQCHC 224
           HHCG + G  C C
Sbjct: 350 HHCGQSLGCNCEC 362


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 347 GRGTPSSSA-DERVGPEPSTRCPSSSVRATSL 255
           G   P+ SA +  V P PS + PS++  ATSL
Sbjct: 152 GVNAPTVSAPNSMVSPPPSFQPPSAAAPATSL 183


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 227 MTLPPSCYATMMLRELMKTDTSSRAQALLSHPLKRTASPDP 349
           + LP S  A +    L KTD     +  ++ PLK T  P P
Sbjct: 517 LVLPNSLSANIQNDVLRKTDFMCTDKENVAFPLKTTTKPMP 557


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 338 TPSSSADERVGPEPSTRCPSSSVRAT 261
           TP+SS   R   +P+T  PS+S  +T
Sbjct: 12  TPTSSIPLRQMSQPTTSAPSNSASST 37


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 401 FNYKTFIIYVTFIARPREGRG 339
           F+YKT + Y+ ++    +GRG
Sbjct: 375 FDYKTTLAYLAYLGFDTDGRG 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,272,685
Number of Sequences: 5004
Number of extensions: 18329
Number of successful extensions: 53
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)