Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0876 - 32654209-32654238,32654357-32654672,32654833-326549...    40   8e-04
09_04_0384 - 17153064-17154233                                         30   0.81 
12_02_0958 + 24814588-24814704,24814957-24815380,24815458-248156...    29   1.4  
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562...    28   3.3  
06_03_0493 + 21402536-21404599                                         27   4.3  
04_01_0218 - 2759211-2760146                                           27   4.3  
06_02_0173 - 12601025-12601071,12601632-12601698,12601857-126019...    27   5.7  
05_01_0072 - 486211-486254,486350-486524,486658-486852,487489-48...    27   5.7  
09_06_0024 - 20304877-20305589,20307495-20307588                       27   7.6  

>01_06_0876 -
           32654209-32654238,32654357-32654672,32654833-32654901,
           32655238-32655275,32655418-32655478,32655550-32655617,
           32655729-32655889,32656687-32656751,32656883-32656956,
           32658158-32658245,32658800-32658879,32659168-32659224,
           32659332-32659404,32659524-32659762,32659846-32660025,
           32660150-32660440
          Length = 629

 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 20/35 (57%), Positives = 23/35 (65%)
 Frame = +2

Query: 212 ALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
           A+ L  TLP S YATM +RELMKT TS   Q  L+
Sbjct: 594 AIKLAFTLPASSYATMAIRELMKTSTSVAHQKTLN 628


>09_04_0384 - 17153064-17154233
          Length = 389

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -2

Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRATSLWRSNWVAMSLSVI 216
           A  R  R + SS A        S+ CPS   R+T LW  N++    SV+
Sbjct: 242 ASDRRRRVSSSSEASTASSSSSSSGCPSPPPRSTPLWVDNYLDKLGSVL 290


>12_02_0958 +
           24814588-24814704,24814957-24815380,24815458-24815669,
           24815853-24816120,24816226-24816416,24816635-24816895
          Length = 490

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 272 LMKTDTSSRAQALLSHPLKRTASPDPPG 355
           + +   + R  AL+ HPLK++  P PPG
Sbjct: 314 VFEASKNKRGVALIFHPLKQSHHPKPPG 341


>09_06_0270 +
           21954652-21955245,21955827-21955964,21956050-21956295,
           21956407-21956520,21956633-21956815,21956926-21957143,
           21957210-21957246,21957865-21958219,21958284-21958337,
           21958513-21958529
          Length = 651

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 275 MKTDTSSRAQALLSHPLKRTASPDPP 352
           M T T++ A ALLS PL  + +P PP
Sbjct: 1   MATATATAALALLSPPLPASPTPPPP 26


>06_03_0493 + 21402536-21404599
          Length = 687

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 212 ALLLTMTLPPSCYATMMLR-ELMKTDTSSRAQALLSHPLKRTA 337
           A   T+  PP+  A +  R  L+++  S  A  LLSHPL  TA
Sbjct: 24  AAFSTLPTPPAAAAPISHRLRLLRSLQSVPADRLLSHPLPSTA 66


>04_01_0218 - 2759211-2760146
          Length = 311

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 250 RHNDVARTD--EDGHLVEGSGPTLSSAEEDGVPRPSRGRAM 366
           R N+ A ++  ED H+ E  G + S+A  D  PR  RG  +
Sbjct: 72  RPNEAASSNQMEDEHMEEEEGGSHSAAVSDDAPRAVRGMTL 112


>06_02_0173 -
          12601025-12601071,12601632-12601698,12601857-12601934,
          12602235-12602396,12603309-12603440,12604604-12604656,
          12605808-12606372
          Length = 367

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = -3

Query: 79 QPPHGAARAVRL 44
          QPPHGAA AVRL
Sbjct: 29 QPPHGAAAAVRL 40


>05_01_0072 -
           486211-486254,486350-486524,486658-486852,487489-487599,
           487693-487905,488432-488539,488621-488762,489157-490418,
           490460-490480,490842-491228
          Length = 885

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 263 LRELMKTDTSSRAQA-LLSHPLKRTASPDP 349
           L E+   D+S+   A LL   L R+ASPDP
Sbjct: 186 LAEVQNNDSSAHTYASLLGSSLSRSASPDP 215


>09_06_0024 - 20304877-20305589,20307495-20307588
          Length = 268

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 374 VTFIARPREGRGTPSSSADERVGPEPSTRCPS 279
           V    R +E  G+ SS++   +  EPS+ CP+
Sbjct: 40  VVHFTRKKEAEGSDSSNSTSSLLLEPSSECPT 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,676,690
Number of Sequences: 37544
Number of extensions: 167161
Number of successful extensions: 655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 655
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)