Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.63 
SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)                   27   7.8  
SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_39140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 179 PPAPQEDGKYEALLLTMTLP--PSCYATMMLRELMKTDTSSRAQALLSHPLKRTASP 343
           P    ED +++A +     P  PS  A   L EL    T   + +L +HPLKR+ SP
Sbjct: 149 PAHDDEDYEFDATVSPSVAPNMPSNPAAEELTELADGMTLETSYSLENHPLKRSLSP 205


>SB_19021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 590

 Score = 30.3 bits (65), Expect = 0.63
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 274 DEDGHLVEGSGPTLSSAEEDGVPRPSRG 357
           D+DG  V+G GP    A  DG+ +  RG
Sbjct: 258 DDDGRTVDGPGPMAKRAFRDGIKKGRRG 285


>SB_36640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 224 TMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLKRTASPDPPGA 358
           T   P  CY  +    L++      A AL+ HPL R  +P P  A
Sbjct: 48  TALCPTPCYGPVP-HPLLRPCVPPPATALVPHPLPRPCAPPPATA 91


>SB_58715| Best HMM Match : COLFI (HMM E-Value=0.011)
          Length = 280

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +1

Query: 214 VITDNDIATQL-LRHNDVARTDEDGHLVEG 300
           ++TD D    + LR  D A +DEDG+L  G
Sbjct: 246 LLTDKDTLPVIRLRAGDTAESDEDGYLTLG 275


>SB_50300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3669

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 214  VITDNDIATQLLRHNDVARTDEDGHLVEGSGPTLSSAEEDG 336
            V +D D++ +    +D A++DEDG + E   P L S   DG
Sbjct: 2062 VESDKDVSGERQELDD-AQSDEDGRVEEVCKPKLFSCGNDG 2101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,564
Number of Sequences: 59808
Number of extensions: 168929
Number of successful extensions: 534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)