Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m02f
(408 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthas... 75 9e-14
BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein. 75 9e-14
AK000492-1|BAA91203.1| 205|Homo sapiens protein ( Homo sapiens ... 75 9e-14
AC073138-1|AAS07447.1| 195|Homo sapiens unknown protein. 75 9e-14
AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein. 75 9e-14
BC068502-1|AAH68502.1| 701|Homo sapiens pseudouridylate synthas... 32 0.85
BC033621-1|AAH33621.1| 701|Homo sapiens pseudouridylate synthas... 32 0.85
AL136759-1|CAB66693.1| 701|Homo sapiens hypothetical protein pr... 32 0.85
AF389880-1|AAL93215.1| 3036|Homo sapiens rabconnectin protein. 31 2.0
AB020663-1|BAA74879.2| 2237|Homo sapiens KIAA0856 protein protein. 31 2.0
AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein. 30 2.6
U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar traffi... 29 6.0
U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome... 29 6.0
U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein. 29 6.0
U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein. 29 6.0
BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein. 29 6.0
AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform p... 29 6.0
>BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae) protein.
Length = 661
Score = 74.9 bits (176), Expect = 9e-14
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LEKDGLDI-KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX 178
L D LDI ++++++ YS GA R+++ RP SW + Y
Sbjct: 551 LTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKT 610
Query: 179 PPAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
PP +GKY AL + +LPPS YATM +RE++K DTS + Q L+
Sbjct: 611 PPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 656
>BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein.
Length = 311
Score = 74.9 bits (176), Expect = 9e-14
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LEKDGLDI-KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX 178
L D LDI ++++++ YS GA R+++ RP SW + Y
Sbjct: 201 LTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKT 260
Query: 179 PPAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
PP +GKY AL + +LPPS YATM +RE++K DTS + Q L+
Sbjct: 261 PPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 306
>AK000492-1|BAA91203.1| 205|Homo sapiens protein ( Homo sapiens
cDNA FLJ20485 fis, clone KAT07835. ).
Length = 205
Score = 74.9 bits (176), Expect = 9e-14
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LEKDGLDI-KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX 178
L D LDI ++++++ YS GA R+++ RP SW + Y
Sbjct: 95 LTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKT 154
Query: 179 PPAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
PP +GKY AL + +LPPS YATM +RE++K DTS + Q L+
Sbjct: 155 PPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 200
>AC073138-1|AAS07447.1| 195|Homo sapiens unknown protein.
Length = 195
Score = 74.9 bits (176), Expect = 9e-14
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LEKDGLDI-KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX 178
L D LDI ++++++ YS GA R+++ RP SW + Y
Sbjct: 85 LTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKT 144
Query: 179 PPAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
PP +GKY AL + +LPPS YATM +RE++K DTS + Q L+
Sbjct: 145 PPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 190
>AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein.
Length = 645
Score = 74.9 bits (176), Expect = 9e-14
Identities = 38/106 (35%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +2
Query: 2 LEKDGLDI-KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX 178
L D LDI ++++++ YS GA R+++ RP SW + Y
Sbjct: 535 LTADNLDIDNMRHKIRDYSLSGAYRKIIIRPQNVSWEVVAYDDPKIPLFNTDVDNLEGKT 594
Query: 179 PPAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALLS 316
PP +GKY AL + +LPPS YATM +RE++K DTS + Q L+
Sbjct: 595 PPVFASEGKYRALKMDFSLPPSTYATMAIREVLKMDTSIKNQTQLN 640
>BC068502-1|AAH68502.1| 701|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae)-like protein.
Length = 701
Score = 31.9 bits (69), Expect = 0.85
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 212 ALLLTMTLPPSCYATMMLRELMKTD 286
+LL++ L SCYAT+ L+E+MK D
Sbjct: 676 SLLISFDLDASCYATVCLKEIMKHD 700
>BC033621-1|AAH33621.1| 701|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae)-like protein.
Length = 701
Score = 31.9 bits (69), Expect = 0.85
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 212 ALLLTMTLPPSCYATMMLRELMKTD 286
+LL++ L SCYAT+ L+E+MK D
Sbjct: 676 SLLISFDLDASCYATVCLKEIMKHD 700
>AL136759-1|CAB66693.1| 701|Homo sapiens hypothetical protein
protein.
Length = 701
Score = 31.9 bits (69), Expect = 0.85
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +2
Query: 212 ALLLTMTLPPSCYATMMLRELMKTD 286
+LL++ L SCYAT+ L+E+MK D
Sbjct: 676 SLLISFDLDASCYATVCLKEIMKHD 700
>AF389880-1|AAL93215.1| 3036|Homo sapiens rabconnectin protein.
Length = 3036
Score = 30.7 bits (66), Expect = 2.0
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 179 PPAPQEDGKYEAL-LLTMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLK 328
P Q+ G +EA +L+ TLP Y L ELM RA+A+LSH +K
Sbjct: 1325 PTVIQDGGLFEAAHVLSPTLPQ--YHPTQLLELMDLGKVRRAKAILSHLVK 1373
>AB020663-1|BAA74879.2| 2237|Homo sapiens KIAA0856 protein protein.
Length = 2237
Score = 30.7 bits (66), Expect = 2.0
Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 179 PPAPQEDGKYEAL-LLTMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLK 328
P Q+ G +EA +L+ TLP Y L ELM RA+A+LSH +K
Sbjct: 525 PTVIQDGGLFEAAHVLSPTLPQ--YHPTQLLELMDLGKVRRAKAILSHLVK 573
>AJ005821-1|CAA06718.2| 3027|Homo sapiens X-like 1 protein protein.
Length = 3027
Score = 30.3 bits (65), Expect = 2.6
Identities = 22/52 (42%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +2
Query: 179 PPAPQED-GKYEAL-LLTMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLK 328
P ED G +EA +L+ TLP Y + L ELM RA+A+LSH +K
Sbjct: 1302 PSVDMEDSGLFEAAHVLSPTLPQ--YHPLQLLELMDLGKVRRAKAILSHLVK 1351
>U84664-1|AAC51185.1| 1411|Homo sapiens putative nucleolar trafficking
phosphoprotein protein.
Length = 1411
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 1010 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1042
>U79659-1|AAB40722.1| 1411|Homo sapiens Treacher Collins syndrome
protein.
Length = 1411
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 1010 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1042
>U76366-1|AAC51181.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 1010 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1042
>U40847-1|AAC50903.1| 1411|Homo sapiens TCOF1 protein.
Length = 1411
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 1010 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1042
>BC027252-1|AAH27252.1| 1126|Homo sapiens TCOF1 protein protein.
Length = 1126
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 995 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1027
>AY460334-1|AAR87774.1| 1488|Homo sapiens treacle major isoform
protein.
Length = 1488
Score = 29.1 bits (62), Expect = 6.0
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 362 ARPREGRGTPSSSADERVGPEPSTRCPSSSVRA 264
A+P R PSS D VG P+T S+SV+A
Sbjct: 1087 AQPPVARTQPSSGVDSAVGTLPATSPQSTSVQA 1119
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,489,698
Number of Sequences: 237096
Number of extensions: 837235
Number of successful extensions: 3142
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3128
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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