Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY069192-1|AAL39337.1|  734|Drosophila melanogaster GH24787p pro...    59   2e-09
AE014296-1465|AAF50409.1|  734|Drosophila melanogaster CG6745-PA...    59   2e-09
AY069118-1|AAL39263.1|  370|Drosophila melanogaster GH13089p pro...    29   2.4  
AE014134-3344|AAF53965.1|  370|Drosophila melanogaster CG1071-PA...    29   2.4  
AB016824-1|BAA33742.1|  370|Drosophila melanogaster E2F-like tra...    29   2.4  
AF217845-1|AAF34753.1| 1178|Drosophila melanogaster DESERT protein.    27   7.2  
AE014296-1518|AAN11996.1| 1235|Drosophila melanogaster CG32025-P...    27   7.2  

>AY069192-1|AAL39337.1|  734|Drosophila melanogaster GH24787p
           protein.
          Length = 734

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 26  KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX-PPAPQE-D 199
           +LK++ KTY+  GA R+++       W+   Y                     P P E +
Sbjct: 589 QLKHKEKTYALAGAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAE 648

Query: 200 GKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALL 313
             Y ALLL  +LP + YATM LREL+K DTSS +Q  L
Sbjct: 649 ANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 686


>AE014296-1465|AAF50409.1|  734|Drosophila melanogaster CG6745-PA
           protein.
          Length = 734

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
 Frame = +2

Query: 26  KLKNRVKTYSARGAVRRLVQRPHAASWALHRYXXXXXXXXXXXXXXXXXXX-PPAPQE-D 199
           +LK++ KTY+  GA R+++       W+   Y                     P P E +
Sbjct: 589 QLKHKEKTYALAGAYRKMIISSSDLKWSFRMYNTPEDTLIASDWELLKNIPVAPEPAEAE 648

Query: 200 GKYEALLLTMTLPPSCYATMMLRELMKTDTSSRAQALL 313
             Y ALLL  +LP + YATM LREL+K DTSS +Q  L
Sbjct: 649 ANYMALLLEFSLPTAAYATMFLRELLKQDTSSASQTQL 686


>AY069118-1|AAL39263.1|  370|Drosophila melanogaster GH13089p
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 ATMMLRELMKTDTSSRAQALLSHPLKRTASPDPP 352
           ++ M+ ++   +TS R+Q+  S P+    SPDPP
Sbjct: 21  SSAMMMKVDSAETSVRSQSYESTPVSMDTSPDPP 54


>AE014134-3344|AAF53965.1|  370|Drosophila melanogaster CG1071-PA
           protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 ATMMLRELMKTDTSSRAQALLSHPLKRTASPDPP 352
           ++ M+ ++   +TS R+Q+  S P+    SPDPP
Sbjct: 21  SSAMMMKVDSAETSVRSQSYESTPVSMDTSPDPP 54


>AB016824-1|BAA33742.1|  370|Drosophila melanogaster E2F-like
           transcription factor(E2F2) protein.
          Length = 370

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 251 ATMMLRELMKTDTSSRAQALLSHPLKRTASPDPP 352
           ++ M+ ++   +TS R+Q+  S P+    SPDPP
Sbjct: 21  SSAMMMKVDSAETSVRSQSYESTPVSMDTSPDPP 54


>AF217845-1|AAF34753.1| 1178|Drosophila melanogaster DESERT protein.
          Length = 1178

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 380 IYVTFIARPREGRGTPSSSADERV---GPEPSTRCPSSSVRAT 261
           I +T   R  E R TPSS A +      P  STRCP  +   T
Sbjct: 688 ISLTTDLRTNEPRTTPSSEAKQSPQTNSPSSSTRCPRETTTET 730


>AE014296-1518|AAN11996.1| 1235|Drosophila melanogaster CG32025-PA
           protein.
          Length = 1235

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -2

Query: 380 IYVTFIARPREGRGTPSSSADERV---GPEPSTRCPSSSVRAT 261
           I +T   R  E R TPSS A +      P  STRCP  +   T
Sbjct: 688 ISLTTDLRTNEPRTTPSSEAKQSPQTNSPSSSTRCPRETTTET 730


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,407,784
Number of Sequences: 53049
Number of extensions: 254573
Number of successful extensions: 1053
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)