Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF047651-5|AAC02722.2|  702|Caenorhabditis elegans Germline-enha...    29   1.7  
Z71178-9|CAA94883.1|  577|Caenorhabditis elegans Hypothetical pr...    27   6.9  
AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical ...    27   6.9  
AC006676-3|AAK71381.3|  157|Caenorhabditis elegans Hypothetical ...    27   6.9  
Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z74037-1|CAA98492.1|  510|Caenorhabditis elegans Hypothetical
           protein F57B7.1a protein.
          Length = 510

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +1

Query: 247 LRHNDVARTDEDGHLVEGSGPTLSSAEEDGVPRPSRGRAMNV 372
           +R  +   TDE  HL+  SGP  S+A  DG+    RG   N+
Sbjct: 474 IRSGEDESTDETSHLLNSSGPN-STASADGI----RGHFQNI 510


>AF047651-5|AAC02722.2|  702|Caenorhabditis elegans
           Germline-enhanced at-hook proteinprotein 1 protein.
          Length = 702

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -2

Query: 365 IARPREGRGTPSSSADERVGPEPSTRCPSSSV 270
           +AR REG   PSSSA   VG  P+T+   ++V
Sbjct: 519 MARNREGSDGPSSSAARPVGRPPTTQPVETAV 550


>Z71178-9|CAA94883.1|  577|Caenorhabditis elegans Hypothetical
           protein B0024.11 protein.
          Length = 577

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 182 PAPQEDGKYEALLLTMTLPPSCYATMMLRELMKTDTSSRA 301
           P  ++ G   AL +  +L    YAT+ LRE+  +D   +A
Sbjct: 500 PEAEQKGPLLALQIQFSLISGSYATVALREVTGSDMGKKA 539


>AC199170-9|ABO33267.1|  388|Caenorhabditis elegans Hypothetical
           protein T08D2.8 protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 368 FIARPREGRGTPSSSADERVGPEPSTRCPSSSVRATSLWR 249
           F+ARP    G P ++      P+ + R P+++  ATS  R
Sbjct: 284 FVARPAPNFGKPRAAVAPARAPQITQRAPAATRPATSAIR 323


>AC006676-3|AAK71381.3|  157|Caenorhabditis elegans Hypothetical
          protein M04F3.2 protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 97 SVRPLHQPPHGAARAV 50
          ++RP  QPPHG A AV
Sbjct: 21 TIRPFLQPPHGPASAV 36


>Z70207-8|CAM33501.1|  835|Caenorhabditis elegans Hypothetical
           protein F15A2.6b protein.
          Length = 835

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 374 VTFIARPREGRGTPSSSADERVGPEPSTRCPSSSVRATS 258
           +  IAR  +   T S+++ +  GP PS R   S    TS
Sbjct: 797 INMIARHSDKTETTSATSSDPYGPSPSMRSVGSGTGITS 835


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +1

Query: 235  ATQLLRHNDVARTDEDGHLVEGSGPTLSSAEEDGVPRPSRGRA 363
            A + LR  +    DE+ H   GSG +    EED V   +RGR+
Sbjct: 1181 AKEDLRQKEEGGGDEEDH--HGSGESDDEDEEDIVEEETRGRS 1221


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,528,464
Number of Sequences: 27780
Number of extensions: 117883
Number of successful extensions: 485
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)