Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m02f
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          25   0.33 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   4.1  
AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   5.4  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 25.0 bits (52), Expect = 0.33
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 224 TMTLPPSCYATMMLRELMKTDTSSRAQALLSHPLK 328
           T  LPP    T M+  L +T TS   + LL H  K
Sbjct: 98  TRKLPPLHPHTAMVTHLPQTLTSENVEILLEHSSK 132


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 317 HPLKRTASPDPPGAAQ 364
           H  K+ ASP+PP +++
Sbjct: 345 HVAKQMASPEPPKSSE 360


>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/25 (24%), Positives = 13/25 (52%)
 Frame = -2

Query: 317 ERVGPEPSTRCPSSSVRATSLWRSN 243
           E++  E +  CP   ++   +WR +
Sbjct: 93  EKISNELNEMCPLEKLKERRIWRDD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,474
Number of Sequences: 438
Number of extensions: 1440
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)