Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m01r
(741 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 186 3e-48
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ... 29 0.70
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 2.1
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po... 27 2.8
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 23 4.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 4.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 26 4.9
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 4.9
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 6.5
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 26 6.5
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 8.6
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 186 bits (453), Expect = 3e-48
Identities = 89/175 (50%), Positives = 121/175 (69%), Gaps = 3/175 (1%)
Frame = -2
Query: 740 YNMSKLWDXPCVFVCENNGYGMGTSVDRSSASTEYYTRGDYVPGVWVDGMDVLATREAAR 561
+NM+KLW P +F CENN YGMGTS +RSSA TE+Y RG Y+PG+ V+GMDVLA +A++
Sbjct: 225 FNMAKLWGLPVIFACENNKYGMGTSAERSSAMTEFYKRGQYIPGLLVNGMDVLAVLQASK 284
Query: 560 FAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNH 381
FA +Y PL+ME TYRY GHSMSDPGT+YR+R+EVQ+VR RDPI K+ I+
Sbjct: 285 FAKKYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEW 344
Query: 380 ELVTPDQLKDIDAKVRKEVDEATKQSKTEP-EVGIEE-LSADIYYKNLEP-FVRG 225
+ ++LK+I+ ++R VDE + ++ P IEE L +D+Y EP + RG
Sbjct: 345 GVANANELKNIEKRIRGMVDEEVRIAEESPFPDPIEESLFSDVYVAGTEPAYARG 399
>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 302 KTEPEVGIEELSADIYYKNLEPFVRGIHPAAPLKHLEVQPRN 177
K EP+VGI+E A Y+ L + +H + + H +++P N
Sbjct: 102 KIEPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 32 AVTKINNFYQRYCHINATVKKNN 100
A+ KINN+ R+ H+N+ KK+N
Sbjct: 126 AIVKINNYNSRFSHVNS--KKSN 146
>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 689 NGYGMGTSVDRSSASTEYYTRGDYVPGV 606
NG+ GT + + A EYY++ D + +
Sbjct: 82 NGFVNGTQISSTPAEREYYSKSDEIKNI 109
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 22.6 bits (46), Expect(2) = 4.4
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 189 PTSQPLKPQYRLYLHHTQ 136
P +QPLKPQ +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268
Score = 21.8 bits (44), Expect(2) = 4.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 252 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 163
Q+ G + P P G P GP + ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 425 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 523
SA PP P S+ +T R P S S P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 26.2 bits (55), Expect = 4.9
Identities = 16/66 (24%), Positives = 33/66 (50%)
Frame = -2
Query: 449 DEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEEL 270
+E + +R+ P+ S + +L+ +T Q D D + +VD+ QS T+P +
Sbjct: 838 EERRPIRRLWWPLRSIRRSLLSQ--LTGHQ-GDYDENIHNDVDKDMNQSSTQPRDPDADH 894
Query: 269 SADIYY 252
+ +Y+
Sbjct: 895 PSSLYH 900
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 4.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 8 KSKVTYCVAVTKINNFYQRY 67
+ K CV +TK+ NFY+ Y
Sbjct: 71 QKKFADCVLLTKVGNFYEMY 90
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 528 SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 424
+ GDG DV ++ D+G +V +E R A AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 646 LADERSTLVPMPYPLFSQTKTQGXSHSLDM 735
L + ST++ YPL T Q SHSL +
Sbjct: 9 LLESFSTVILSIYPLAKSTNQQSHSHSLSL 38
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 389 LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELS 267
LN++ + + +AK ++ V+E TKQ + + + + ELS
Sbjct: 178 LNNQPIEKSSVDKENAKRKRYVEEGTKQGQKKKPLRVIELS 218
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,639
Number of Sequences: 5004
Number of extensions: 54566
Number of successful extensions: 191
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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