Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m01r
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383...   194   8e-50
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761...   185   3e-47
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403          124   1e-28
12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421...    75   8e-14
09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708...    30   1.7  
08_02_0944 + 22868885-22870387                                         29   2.9  
06_02_0155 + 12380452-12381012                                         29   2.9  
06_03_1259 - 28800954-28802468                                         29   3.9  
03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041...    29   3.9  
04_03_0367 + 14970511-14970697,14970862-14970869                       29   5.1  
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737...    29   5.1  
11_06_0437 - 23533218-23536382                                         28   6.8  
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936...    28   6.8  
07_03_1649 - 28385289-28385358,28387039-28387877                       28   6.8  
03_02_0797 - 11296426-11297258,11297745-11297901                       28   6.8  
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104...    28   9.0  

>02_05_0689 -
           30937621-30937665,30938143-30938208,30938303-30938356,
           30938489-30938560,30938648-30938743,30939883-30939960,
           30940485-30940564,30940662-30941343
          Length = 390

 Score =  194 bits (472), Expect = 8e-50
 Identities = 89/163 (54%), Positives = 118/163 (72%)
 Frame = -2

Query: 737 NMSKLWDXPCVFVCENNGYGMGTSVDRSSASTEYYTRGDYVPGVWVDGMDVLATREAARF 558
           N+S LW  P + VCENN YGMGT+  R++ S  YY RGDYVPG+ VDGMDVLA ++A +F
Sbjct: 210 NISALWKLPAILVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQACKF 269

Query: 557 AIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHE 378
           A E+  A  GP+V+EM+TYRY GHSMSDPG++YRTRDE+  VRQ RDPI   ++ IL H+
Sbjct: 270 AKEHAIAN-GPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLILAHD 328

Query: 377 LVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYK 249
           L T  +LKD++ ++RKEVD+A  ++K  P     EL  ++Y K
Sbjct: 329 LATAAELKDMEKEIRKEVDDAIAKAKESPMPDTSELFTNVYVK 371


>06_01_0981 +
           7613381-7614086,7614203-7614282,7614883-7614960,
           7615166-7615261,7615370-7615441,7615676-7615729,
           7615819-7615884,7616291-7616335
          Length = 398

 Score =  185 bits (451), Expect = 3e-47
 Identities = 86/170 (50%), Positives = 118/170 (69%), Gaps = 2/170 (1%)
 Frame = -2

Query: 737 NMSKLWDXPCVFVCENNGYGMGTSVDRSSASTEYYTRGDYVPGVWVDGMDVLATREAARF 558
           NM+ LW  P V VCENN YGMGT+  R+S S  YY RGDYVPG+ VDGMDVLA ++A +F
Sbjct: 218 NMAALWKLPVVLVCENNHYGMGTAEWRASKSPAYYKRGDYVPGLKVDGMDVLAVKQACKF 277

Query: 557 AIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHE 378
           A ++     GP+++EM+TYRY GHSMSDPG++YRTRDE+  +RQ RDPI   ++ +L H+
Sbjct: 278 AKQHA-LENGPIILEMDTYRYHGHSMSDPGSTYRTRDEIAGIRQERDPIERVRKLLLAHD 336

Query: 377 LVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKN--LEPF 234
             T  +LKD++ ++RK+VD A  ++K  P     EL  ++Y  +  LE F
Sbjct: 337 FATTQELKDMEKEIRKQVDTAIAKAKESPMPDPSELFTNVYVNDCGLESF 386


>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
          Length = 425

 Score =  124 bits (298), Expect = 1e-28
 Identities = 66/151 (43%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
 Frame = -2

Query: 737 NMSKLWDXPCVFVCENNGYGMGTSVDRSSASTEYYTRGDY--VPGVWVDGMDVLATREAA 564
           NM++LW  P VFV ENN + +G S  R+++  E Y +G    +PGV VDGMDVL  RE A
Sbjct: 237 NMAQLWKLPIVFVVENNLWAIGMSHLRATSDPEIYKKGPAFGMPGVHVDGMDVLKVREVA 296

Query: 563 RFAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILN 384
           + AIE    G+GP ++E ETYR+ GHS++DP    R  DE       RDPIT+ K+ I+ 
Sbjct: 297 KEAIERARRGEGPTLVECETYRFRGHSLADP-DELRRPDEKSHY-AARDPITALKKYIIE 354

Query: 383 HELVTPDQLKDIDAKVRKEVDEATKQSKTEP 291
             L T  +LK I+ K+   V+EA + +   P
Sbjct: 355 QNLATESELKSIEKKIDDVVEEAVEFADASP 385


>12_01_0535 +
           4208410-4208661,4209529-4209627,4210125-4210265,
           4210378-4210560,4210664-4210821,4210905-4211004,
           4211085-4211196,4211241-4211419,4211489-4211674,
           4211762-4211929
          Length = 525

 Score = 74.5 bits (175), Expect = 8e-14
 Identities = 49/176 (27%), Positives = 80/176 (45%), Gaps = 15/176 (8%)
 Frame = -2

Query: 737 NMSKLWDXPCVFVCENNGYGMGTSVDRSSASTEYYTR--------GDYVPG-------VW 603
           N + + + P +F C NNG+ + T       S  Y           G  + G       + 
Sbjct: 319 NFAAVMEAPVIFFCRNNGWAISTPTSEQFRSDLYNNLNSTAIAGDGAVIRGQAYGMRSIR 378

Query: 602 VDGMDVLATREAARFAIEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQT 423
           VDG D LA   A   A E       P+++E  TYR   HS SD  T YR  DE++  R  
Sbjct: 379 VDGNDALAVYSAVHTAREMAIKEGRPILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTA 438

Query: 422 RDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELSADIY 255
           RDPI+ +++ +  +     +   ++   VR+E+ +A + ++  P+  + EL  D+Y
Sbjct: 439 RDPISRYRKWVQGNGWWCDEDESELRNNVRQELLKAIQVAERMPKPPLAELFTDVY 494


>09_04_0744 -
           19867604-19867686,19868075-19869872,19870777-19870801,
           19872313-19872710
          Length = 767

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 396 LLERSDGVSGLPHLLHLVSRPIRRAGVRHRMTRV 497
           LL+  DG+SG+PHL +L    +++ G +  +  +
Sbjct: 691 LLDSKDGLSGVPHLTNLNELLVKKCGEKENLMEI 724


>08_02_0944 + 22868885-22870387
          Length = 500

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = -2

Query: 419 DPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKNLE 240
           D IT+  E  +   L  P ++    AKVR E+D A    KT  E  I  L    Y + + 
Sbjct: 301 DTITATVEWAMAELLRNPSEM----AKVRAEMDGALGGKKTVDEPDIARLP---YLQAVV 353

Query: 239 PFVRGIHPAAPL 204
                +HPAAPL
Sbjct: 354 KEAMRLHPAAPL 365


>06_02_0155 + 12380452-12381012
          Length = 186

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 416 GLWSASPPAPRLSSDTTCRGPTSNDQ 493
           G   A+PPAP  S DT  R PT  D+
Sbjct: 50  GNGGAAPPAPATSPDTEVRAPTYGDK 75


>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +3

Query: 393 LLLERSDGVSGLPHLLHLVSRPIRRAGVRHRMTRVTVRLHLHHQRTFPCVAVLD 554
           +L++ +DG SG  + L+  S+     G R   T  TVRLH  HQ   P  ++ D
Sbjct: 54  ILIDEADGASGGANDLYDASQLY--LGARCLATAPTVRLHKPHQAPRPVASLPD 105


>03_06_0296 +
           32901696-32901892,32901989-32902232,32903992-32904112,
           32904219-32904406
          Length = 249

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 519 DGDGDVPLLWSFDVGPRHVVSDE 451
           D DG VP  W  D   R VVSD+
Sbjct: 148 DADGSVPFYWGVDPDSRLVVSDD 170


>04_03_0367 + 14970511-14970697,14970862-14970869
          Length = 64

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 507 DVPLLWSFDVGPRHVVSDERRGAGGEADQR 418
           D+PL W   V P      E RGAGG+ ++R
Sbjct: 11  DLPLAWPGRVDPPLAGLGEGRGAGGDEEER 40


>01_05_0270 -
           20271859-20272866,20273043-20273058,20273455-20273756,
           20273932-20274231
          Length = 541

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 449 DEVQEVRQTRDPITSFKEKI-LNHELVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGIEE 273
           ++   VR  R   T F E + ++ +++       +++K  KE     K  +   E GIE 
Sbjct: 105 EQKPNVRYMRQITTKFSESMDISQQVIQQAHFVKMESKKEKEYFSVKKCQELAFECGIEH 164

Query: 272 LSADIY 255
            SA++Y
Sbjct: 165 DSAEVY 170


>11_06_0437 - 23533218-23536382
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -2

Query: 380 ELVTPDQL-KDIDAKVRKEVDEATKQSKTEPEVGIEELSADIYYKNLEPF 234
           +LV P+ + +D+    RK VD   K  +   ++  +E  ADI +K  EP+
Sbjct: 166 KLVEPNLVGRDVVHACRKLVDLVIKNKEKTADIENKEKKADIEHKKKEPY 215


>08_02_0274 -
           15192670-15192983,15193110-15193200,15193295-15193603,
           15193859-15193944,15196034-15196088,15196689-15196757,
           15197027-15197074,15198090-15198203,15198464-15198526,
           15199236-15199427,15199519-15199643,15199723-15199779,
           15200209-15200332,15200478-15200543,15200656-15200738,
           15200916-15201036,15201663-15201773,15201841-15201936,
           15202032-15202107,15202878-15203016,15203283-15203346,
           15203454-15203527,15203845-15203923,15204473-15204547
          Length = 876

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 458 RTRDEVQEVRQTRDPITSFKEKILN-HELVTPDQLKDIDAKVR 333
           RTRDE+ +V++ +D +T   +K+ +  E   PD   +I   V+
Sbjct: 546 RTRDELMDVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVK 588


>07_03_1649 - 28385289-28385358,28387039-28387877
          Length = 302

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +3

Query: 435 LLHLVSRPIRRAGVRHRMT-RVT-VRLHL 515
           ++HLVS P+  A V HR T R++ V LHL
Sbjct: 43  VVHLVSTPVNLAAVAHRRTDRISLVELHL 71


>03_02_0797 - 11296426-11297258,11297745-11297901
          Length = 329

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
 Frame = +2

Query: 416 GLWSASPPAPRLSSDTTCRGPTSNDQSNGTSPS-PSPKD 529
           G  S   PAP LSS T      S D   G  PS P+  D
Sbjct: 206 GAQSGGTPAPELSSTTAGSSSLSTDSGAGAQPSWPTQAD 244


>01_06_1430 -
           37309737-37309946,37310049-37310100,37310348-37310427,
           37310538-37310606,37310710-37310843,37311173-37311332,
           37311483-37311554,37312113-37312246,37312386-37312521,
           37313273-37313416
          Length = 396

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -2

Query: 449 DEVQEVRQTRDPITSFKEKILNHE---LVTPDQLKDIDAKVRKEVDEATKQSKTEPEVGI 279
           D     RQ  D     + K +N E    V PD+  +++A++  + +EATK+ +    V  
Sbjct: 288 DRANAFRQHHDLFQQKEYKGVNLEKLKFVNPDKFSELEAELTADSEEATKRFEHIVAVMN 347

Query: 278 EELS 267
           EEL+
Sbjct: 348 EELA 351


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,881
Number of Sequences: 37544
Number of extensions: 385826
Number of successful extensions: 1710
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1706
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)