Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m01f
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...   124   1e-29
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    31   0.11 
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    27   1.8  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   1.8  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    27   3.1  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    26   5.3  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.1  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   7.1  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.1  
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   7.1  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score =  124 bits (298), Expect = 1e-29
 Identities = 57/112 (50%), Positives = 78/112 (69%)
 Frame = +2

Query: 287 HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 466
           +K+D  P+T   +T  + L LYE++  +RR+E A   LYK K IRGFCHL  GQEAVA G
Sbjct: 62  YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120

Query: 467 MRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHL 622
           +  A+   DS+IT+YRCHG+ Y  G+S+  ++ EL GR+ G S+GKGGSMH+
Sbjct: 121 IEGAITLDDSIITSYRCHGFAYTRGLSIRSIIGELMGRQCGASKGKGGSMHI 172


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 31.5 bits (68), Expect = 0.11
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -2

Query: 631 RPYQMHGTSLAPGATGPAPRQLRE--HPQHTNAHEISPS 521
           RP   H  S AP ++ P    L    HP HTNA +++ S
Sbjct: 78  RPQPWHSNSAAPASSSPTSATLSTAAHPVHTNAAQVAGS 116


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 423 PRMIFSLYRFPDAVSILRNIV 361
           PR++F +   PDAV IL+N++
Sbjct: 332 PRIVFHIQITPDAVEILKNVL 352


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 627 RTKCMEPPLPREQPVLRPVSSESTPSTLT 541
           RTK +E P+P E     P +  S PS++T
Sbjct: 283 RTKSVETPVPMEAAEEEPATEYSIPSSVT 311


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 949

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 27/98 (27%), Positives = 42/98 (42%)
 Frame = -3

Query: 615 MEPPLPREQPVLRPVSSESTPSTLTPMR*VHP*QRYAVITESASRIAALIPTATASCPEY 436
           +E P+   +PV  P  +E TP TL+P+      +    + E +   A       AS   Y
Sbjct: 41  LEDPVNPIRPVYTPTRTEITPVTLSPIPITPVREFQPYLHEISQEYARYSKQKRASLRRY 100

Query: 435 R*QKPRMIFSLYRFPDAVSILRNIVSCSYSLRASSEVS 322
             +  ++  S+       S+LR   S S  LR +SE S
Sbjct: 101 LEKHGKLEGSMKESSINGSLLRR-SSVSTILRPASESS 137


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 26/89 (29%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
 Frame = -3

Query: 630 VRTKCMEPPL---PREQPVLRPVSSESTPSTL-TPMR*VHP*QR----YAVITESASRIA 475
           +R      PL   PR++P L P+S  + PST+ T  R     Q+    YA I E  S + 
Sbjct: 299 IRDSLQSSPLNFPPRDRPPLIPISRIAVPSTIETEERQYRGNQKIINFYAKIFEPNSGLG 358

Query: 474 ALIPTATASCPEYR*QKPRMIFSLYRFPD 388
                A++S P+      +     Y  PD
Sbjct: 359 TSSEGASSSFPDVDPNLAQNGVPYYSLPD 387


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 257 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQ 358
           A F+IKP  L    Q P  +  L  E ++ LY++
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYDE 376


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 284 LHKLDQGPATSATLTSEDALKLYEQ---LT-ILRRIETASGNLYKEKI 415
           LH L + P  ++TLT+E AL+  E    LT      E + G  Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = -3

Query: 627 RTKCM--EPPLPREQPVLRPVSSESTPST 547
           RTK +  E P+  E+P L   +S STP+T
Sbjct: 410 RTKSLSKESPVEPEKPALPDATSSSTPTT 438


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 425 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 330
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 425 NHG*SFLYIGFLMRFQSSAISSVVHTA*EHLQ 330
           N+G S L I  LM  +   + +V+HTA +H+Q
Sbjct: 147 NYGLSILSIHALMCVECECLLNVIHTA-QHMQ 177


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 257 ATFEIKPYKLHKLDQGPATSATLTSEDA 340
           A F++ P+K+  LD   + S  LT +DA
Sbjct: 41  APFDVPPFKVESLDVLISQSEQLTKQDA 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,562,808
Number of Sequences: 5004
Number of extensions: 49589
Number of successful extensions: 157
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)