Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m01f
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 127 7e-30
06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 126 2e-29
04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 93 2e-19
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 31 1.0
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 28 5.5
11_06_0549 + 24868344-24868930,24869740-24869957,24870018-248701... 28 7.3
06_03_0968 - 26402154-26403834,26404322-26404383,26404473-264046... 28 7.3
02_02_0185 - 7590355-7590669 28 7.3
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 9.7
08_01_0465 + 4099721-4100556,4101505-4103614 27 9.7
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733... 27 9.7
>02_05_0689 -
30937621-30937665,30938143-30938208,30938303-30938356,
30938489-30938560,30938648-30938743,30939883-30939960,
30940485-30940564,30940662-30941343
Length = 390
Score = 127 bits (307), Expect = 7e-30
Identities = 66/143 (46%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Frame = +2
Query: 203 KVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIE 382
+ TA + A + ST P+ H +D P+ T T + L + ++++RR+E
Sbjct: 16 QATALIAARSISDSTAPLTIETSVPFTSHIVDP-PSRDVTTTPAELLTFFRDMSVMRRME 74
Query: 383 TASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLM-GVSVLGV 559
A+ +LYK K+IRGFCHLY GQEAVAVGM AA+ +DS+ITAYR H TYL G ++
Sbjct: 75 IAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITRSDSIITAYRDH-CTYLARGGDLVSA 133
Query: 560 LSELTGRRTGCSRGKGGSMHLVR 628
+EL GR+ GCSRGKGGSMH +
Sbjct: 134 FAELMGRQAGCSRGKGGSMHFYK 156
>06_01_0981 +
7613381-7614086,7614203-7614282,7614883-7614960,
7615166-7615261,7615370-7615441,7615676-7615729,
7615819-7615884,7616291-7616335
Length = 398
Score = 126 bits (304), Expect = 2e-29
Identities = 62/118 (52%), Positives = 78/118 (66%)
Frame = +2
Query: 275 PYKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 454
PYK H +D P AT T+ + + ++ +RR E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 48 PYKSHIVDPPPREVAT-TARELATFFRDMSAMRRAEIAADSLYKAKLIRGFCHLYDGQEA 106
Query: 455 VAVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLVR 628
VAVGM AA AD++ITAYR H G + + +EL GRR GCSRGKGGSMHL +
Sbjct: 107 VAVGMEAATTRADAIITAYRDHCAYLARGGDLAALFAELMGRRGGCSRGKGGSMHLYK 164
>04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403
Length = 425
Score = 92.7 bits (220), Expect = 2e-19
Identities = 45/112 (40%), Positives = 64/112 (57%)
Frame = +2
Query: 287 HKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 466
+K A + +T E+AL+LYE + + R E +Y + GF HLY+GQEAV+ G
Sbjct: 61 NKAAPAAAAHSAVTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTG 120
Query: 467 MRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHL 622
+ AD V++ YR H GV V++EL G+ TGC RG+GGSMH+
Sbjct: 121 FIKLLNQADCVVSTYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHM 172
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Frame = +2
Query: 161 IPSAAK-FLAGNTITKVTAPVVATNAKY-STKKEATFEIKPYKLHKLDQGP-----ATSA 319
+PSA F +G I + + + A + + ST +T E PY+ L GP A +
Sbjct: 342 LPSATSAFHSGGVIPNLRSSLAANPSGFLSTSTSSTVEETPYRTRPLSGGPLSKLQAPRS 401
Query: 320 TLTSEDALKLYEQLTILRRIETASGNLYKE 409
+ +D + ++ L ++ +SG+L+ +
Sbjct: 402 NFSLKDDMDVFSPLVDVQPFTPSSGSLWDD 431
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 221 VATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLY 352
+ TN S + + F+ K H DQ + S + ++E+A+KLY
Sbjct: 486 IETNKLRSRRSQEFFQTPEKKTHTDDQKHSESMSNSAENAIKLY 529
>11_06_0549 +
24868344-24868930,24869740-24869957,24870018-24870175,
24870202-24870633,24870717-24871064
Length = 580
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +2
Query: 203 KVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 346
K P+ AKY + F + K HK+ + AT+A T+ L+
Sbjct: 236 KTEFPIHLDQAKYESILREVFPLATSKPHKVQEAAATAAAATTAATLE 283
>06_03_0968 -
26402154-26403834,26404322-26404383,26404473-26404682,
26404776-26404860,26405461-26405618,26405745-26405868,
26405955-26406123,26406202-26406287,26406379-26406467,
26406564-26406735,26407820-26408193
Length = 1069
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 84 NNYYCQNLSRYIKSQEKLHVFQ 19
N Y C S Y+K+Q++L V+Q
Sbjct: 385 NKYKCDGCSDYVKAQKRLTVYQ 406
>02_02_0185 - 7590355-7590669
Length = 104
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 234 QNTARKKRRHSKSSPTNSINWIRALQHQP 320
+ A +RRH+ +S + W R L+H+P
Sbjct: 18 EGAADDQRRHAMASAAAEVPWRRVLRHRP 46
>10_08_0850 +
21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 313 CCRALIQFMEFVGLDFECRLFFRAVFCVCRYNRCSHFRDC 194
C R+ + +M V L C +FF +C + C+ FRDC
Sbjct: 480 CLRSSLMWMGAVELSLVCSVFF-----ICEWATCT-FRDC 513
>08_01_0465 + 4099721-4100556,4101505-4103614
Length = 981
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 402 IKKRSSVVSVTCIQDKKPWQ*V*EQRCEMQ-TQ*SPRIVVT 521
++K+ S+V + I DKK W+ + RC +Q + R+VVT
Sbjct: 275 VEKKRSIVIIDDIWDKKSWELI---RCALQDSNCGSRVVVT 312
>01_06_0061 -
26071984-26072343,26072792-26073139,26073228-26073371,
26073454-26073723,26075019-26075825
Length = 642
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 273 LISNVASFFVLYFAFVATTGAVTFVIVFPAKNL 175
++S A F+ + F F+A GA FV+ +P +N+
Sbjct: 183 VLSREALFYTVIFPFIAFFGAFAFVL-YPLRNV 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,169,183
Number of Sequences: 37544
Number of extensions: 337913
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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