Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m01f
         (644 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      165   2e-41
SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)                       29   4.3  
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.3  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   5.7  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  165 bits (402), Expect = 2e-41
 Identities = 73/115 (63%), Positives = 88/115 (76%)
 Frame = +2

Query: 278 YKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAV 457
           Y LHK+  GP   A +T E+ L  Y Q+ I+RR+ETA+ NLYK K+IRGFCHLYSGQEA 
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEAC 61

Query: 458 AVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHL 622
            VGM A++   DSVITAYRCHGWTY+ G S   VL ELTGR+TGC++GKGGSMH+
Sbjct: 62  CVGMEASIDKNDSVITAYRCHGWTYMRGRSAREVLCELTGRKTGCTQGKGGSMHM 116


>SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)
          Length = 437

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 524 WTYLMGVSVLGVLSELTGRRTGCSRGKGGS 613
           W+YL  V+ L    EL  RR+GC   +G S
Sbjct: 242 WSYLPAVAELPATPELHDRRSGCWNKRGRS 271


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 410 KIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLM 538
           +++  + H Y+  E VA G+R  + + D+ +  +R + + Y+M
Sbjct: 503 RLLSAYTHAYTYAEGVADGIR--LLETDTCVATHRVYAYVYVM 543


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 636  SCVRTKCMEPPLPREQPVLRPVSSESTPSTL 544
            +C  T+ +E PL R QP+     S ++PST+
Sbjct: 1825 ACTYTRTLEVPLARLQPLQEHARSTTSPSTV 1855


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 170  AAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKL 349
            A+  LA  T+++V   VV  N   +   E TF+        LD   AT A     + LK 
Sbjct: 2125 ASPTLAETTVSEVD--VVLHNKAQALSTEETFDFSSGDNTNLDASGATEAQFQKTNPLKR 2182

Query: 350  YEQLTILR 373
             + +T+L+
Sbjct: 2183 LDPVTVLQ 2190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,913,265
Number of Sequences: 59808
Number of extensions: 396510
Number of successful extensions: 1158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)