Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12m01f
(644 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical pr... 188 3e-48
Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical pr... 186 1e-47
AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical ... 31 0.70
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 30 1.6
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 30 1.6
U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical pr... 29 2.1
AF077542-2|AAC26294.1| 244|Caenorhabditis elegans Hypothetical ... 29 2.1
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical pr... 28 6.5
Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical p... 28 6.5
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 6.5
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 6.5
AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical ... 28 6.5
Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical pr... 27 8.6
>Z47812-8|CAD59156.1| 414|Caenorhabditis elegans Hypothetical
protein T05H10.6b protein.
Length = 414
Score = 188 bits (458), Expect = 3e-48
Identities = 89/152 (58%), Positives = 107/152 (70%)
Frame = +2
Query: 167 SAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 346
S A L + +TA + T E +F KP KLHKLD GP TS TL EDALK
Sbjct: 15 STAMSLFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALK 74
Query: 347 LYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGW 526
Y + ++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+AAM + D+VITAYRCHGW
Sbjct: 75 YYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGW 134
Query: 527 TYLMGVSVLGVLSELTGRRTGCSRGKGGSMHL 622
T+L+G +V VL+ELTGR G GKGGSMH+
Sbjct: 135 TWLLGATVTEVLAELTGRVAGNVHGKGGSMHM 166
>Z47812-7|CAA87793.1| 397|Caenorhabditis elegans Hypothetical
protein T05H10.6a protein.
Length = 397
Score = 186 bits (453), Expect = 1e-47
Identities = 87/147 (59%), Positives = 105/147 (71%)
Frame = +2
Query: 182 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 361
L + +TA + T E +F KP KLHKLD GP TS TL EDALK Y +
Sbjct: 3 LFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALKYYRDM 62
Query: 362 TILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLMG 541
++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+AAM + D+VITAYRCHGWT+L+G
Sbjct: 63 QVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKAAMTEGDAVITAYRCHGWTWLLG 122
Query: 542 VSVLGVLSELTGRRTGCSRGKGGSMHL 622
+V VL+ELTGR G GKGGSMH+
Sbjct: 123 ATVTEVLAELTGRVAGNVHGKGGSMHM 149
>AC024753-1|AAF60456.1| 732|Caenorhabditis elegans Hypothetical
protein Y23H5B.6 protein.
Length = 732
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +2
Query: 143 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPAT 313
+K+S + S K L +TKV+A N K + TF + +L +L++GP+T
Sbjct: 579 EKISNITISKTKPLK-KAVTKVSAAKKILNKKLKVNTKKTFGAEDDELEELEEGPST 634
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 29.9 bits (64), Expect = 1.6
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Frame = +2
Query: 146 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 322
+ S + P +A + K +AP ++ KKE TFE K L Q A S
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431
Query: 323 LTSEDALK--------LYEQLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA-VAV 463
E+ LK + ++LT + R E + EK+I R C GQ A +
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNASSSS 491
Query: 464 GMRAAMRDADSVITA-YRCHGWTY 532
AA+R+ S A R +G+ +
Sbjct: 492 ASSAALRNGRSKKAASARLYGYEF 515
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 29.9 bits (64), Expect = 1.6
Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 15/144 (10%)
Frame = +2
Query: 146 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 322
+ S + P +A + K +AP ++ KKE TFE K L Q A S
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431
Query: 323 LTSEDALK--------LYEQLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA-VAV 463
E+ LK + ++LT + R E + EK+I R C GQ A +
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNASSSS 491
Query: 464 GMRAAMRDADSVITA-YRCHGWTY 532
AA+R+ S A R +G+ +
Sbjct: 492 ASSAALRNGRSKKAASARLYGYEF 515
>U23522-2|AAC46818.1| 521|Caenorhabditis elegans Hypothetical
protein W06B4.2 protein.
Length = 521
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 362 TILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAMRDADS 496
T+ RRIET + K+ R LY+G E A G + + DAD+
Sbjct: 171 TLERRIETEKETIDIFKMTRESLGLYAGIEGGATGSKLVIIDADT 215
>AF077542-2|AAC26294.1| 244|Caenorhabditis elegans Hypothetical
protein Y57G7A.5 protein.
Length = 244
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Frame = +2
Query: 287 HKLDQGPATSATLTSE--DALKLYEQLTILRRIETASGNLYK-EKIIRGFCHLY 439
H LD+ L+ E D L ++ ++ R ETA GN+Y EK +R HLY
Sbjct: 50 HVLDEQTRLRTRLSEEFGDFLNRSKR-SLTRNFETADGNVYSFEKNLRELLHLY 102
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 609 PPLPREQPVLRPVSSESTPSTLTPM 535
PP+P PV+ PV S T + PM
Sbjct: 237 PPIPSRAPVMSPVQSPLTHPPVAPM 261
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 268 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 185
++C + + +V C+ Y RC + DC G
Sbjct: 97 WQCDTYTWHSVSCIAEYQRCDNITDCADG 125
>Z71266-7|CAA95845.1| 987|Caenorhabditis elegans Hypothetical
protein R06C7.8 protein.
Length = 987
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 196 NHESDCTGCSDKRKIQHEKRGDI 264
N+ES+ TGC +R+ + K+GDI
Sbjct: 624 NNESEITGCKIRRRSEIIKQGDI 646
>Z69902-11|CAA93766.2| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 182 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 361
+AG T K AT AK++ E EIK + K D+G + + L + L Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410
Query: 362 T 364
T
Sbjct: 411 T 411
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 6.5
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 268 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 185
++C + + +V C+ Y RC + DC G
Sbjct: 97 WQCDTYTWHSVSCIAEYQRCDNITDCADG 125
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 609 PPLPREQPVLRPVSSESTPSTLTPM 535
PP+P PV+ PV S T + PM
Sbjct: 237 PPIPSRAPVMSPVQSPLTHPPVAPM 261
>AL033535-1|CAB70217.1| 935|Caenorhabditis elegans Hypothetical
protein C47D12.8 protein.
Length = 935
Score = 27.9 bits (59), Expect = 6.5
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +2
Query: 182 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEQL 361
+AG T K AT AK++ E EIK + K D+G + + L + L Q+
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSEDLSRQV 410
Query: 362 T 364
T
Sbjct: 411 T 411
>Z50756-4|CAA90639.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 630 VRTKCMEPPLPREQPVLRPVSSESTPSTLTP 538
V+T+C +PP+ R Q V S++TP+ TP
Sbjct: 76 VQTQCHQPPVVRSQTHQASV-SQTTPTQTTP 105
>Z50741-5|CAA90612.1| 482|Caenorhabditis elegans Hypothetical
protein T08D10.1 protein.
Length = 482
Score = 27.5 bits (58), Expect = 8.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 630 VRTKCMEPPLPREQPVLRPVSSESTPSTLTP 538
V+T+C +PP+ R Q V S++TP+ TP
Sbjct: 76 VQTQCHQPPVVRSQTHQASV-SQTTPTQTTP 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,495,323
Number of Sequences: 27780
Number of extensions: 291752
Number of successful extensions: 872
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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