Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12m01f
         (644 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.47 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    24   1.4  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   1.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.3  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.8  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
 Frame = +2

Query: 353 EQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRAAM-----------RDADSV 499
           +++ IL +I    G+L     I G C L+   E++ VGM  A               D  
Sbjct: 281 DRIDILSQINGILGSLVA---ITGGCFLFRAWESIIVGMIGAFITCFTMPLLDKMHIDDP 337

Query: 500 ITAYRCHGWTYLMGVSVLGVLSE------LTGRRTGCSRGKGG 610
           + A   HG + + G+  +G+ ++       T  R G  +G GG
Sbjct: 338 VGASATHGASGIWGIIAIGLFADNPYPLNTTNGRKGLLKGGGG 380


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +2

Query: 158 LIPSAAKFLAGNTI--TKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTS 331
           L  +  +F   NTI   K T P+   N+KY  K   T ++   +  K   G   S + +S
Sbjct: 305 LFAAMVEFAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSS 364

Query: 332 EDALKLYEQ 358
            D     +Q
Sbjct: 365 LDNTNTNDQ 373


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 412 DHPWFLSPVFRTRSRGSRYESSDAR 486
           +HPWF   V R +     Y   DAR
Sbjct: 128 EHPWFKKSVQRIKPYDEYYVWRDAR 152


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 116 LSSDPSEGPHLIITIAKIYRGT*NHKRNYTSFSPSA 9
           LSS P E     I   K+ R    +KR  T+F P A
Sbjct: 135 LSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRA 170


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 566 ELTGRRTGCSRGKGGS 613
           E TGR  G   GKGGS
Sbjct: 76  EETGRGKGRGHGKGGS 91


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 338 ALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQ 448
           AL    + T+L   ET +  +Y EK+     H +  Q
Sbjct: 463 ALSRRIKATVLFATETGTSQMYAEKLSELLGHAFHSQ 499


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,193
Number of Sequences: 438
Number of extensions: 3890
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)