Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l23f
         (543 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0659 - 24797477-24797533,24797614-24797726,24797814-247979...   103   9e-23
04_04_0506 - 25723809-25724299,25725082-25725237,25725316-257254...    96   1e-20
04_03_0611 - 18011469-18012563,18012756-18012920,18013542-180136...    31   0.79 
03_05_0161 + 21400580-21401695                                         30   1.4  
04_04_0387 + 24869594-24871480                                         27   7.3  
05_07_0031 - 27183252-27183317,27183542-27184282                       27   9.7  
01_04_0054 - 15456668-15459691                                         27   9.7  

>02_04_0659 -
           24797477-24797533,24797614-24797726,24797814-24797943,
           24798727-24798828,24798951-24798953
          Length = 134

 Score =  103 bits (247), Expect = 9e-23
 Identities = 57/135 (42%), Positives = 77/135 (57%)
 Frame = +3

Query: 48  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 227
           MPF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  
Sbjct: 1   MPFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD--MVRCQINFKRLSLTDI 58

Query: 228 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 407
           ++          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++KR 
Sbjct: 59  KIDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIKRG 118

Query: 408 RARTAVFKSLKVKAA 452
            A       LK  AA
Sbjct: 119 GAIRQELAKLKKTAA 133


>04_04_0506 -
           25723809-25724299,25725082-25725237,25725316-25725445,
           25726484-25726585,25726630-25726671
          Length = 306

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 50/117 (42%), Positives = 70/117 (59%)
 Frame = +3

Query: 51  PFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFR 230
           PF R+VE GRVALV  G   G+LV +VDV+DQ RALVD P   + R QI   +L LT  +
Sbjct: 15  PFKRFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAP--DMVRCQINFKRLSLTDIK 72

Query: 231 LKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVK 401
           +          + KA  +A +  KW  S W +KL  +++RA + D+DRFK+  A++K
Sbjct: 73  IDIKRVPKKTTLIKAMEEADVKNKWENSSWGKKLIVQKRRASLNDFDRFKVMLAKIK 129


>04_03_0611 -
           18011469-18012563,18012756-18012920,18013542-18013639,
           18014541-18015498
          Length = 771

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 17/60 (28%), Positives = 25/60 (41%)
 Frame = -3

Query: 532 GFLVAFLVRTFFAAALGIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVIC 353
           G +VA+L R F A    +          A  FK+L    + R  L      +NL  S++C
Sbjct: 320 GEIVAYLFRNFEAKFQSLILTLTDTPNVAVAFKILMNVNMERITLAMEIATINLEVSIVC 379


>03_05_0161 + 21400580-21401695
          Length = 371

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 211 SWFKRICCLGTPLPGPSTSARVWSITSTTLTN 116
           SWF   C  G P P P  +A V + TS+ L +
Sbjct: 308 SWFMDSCSYGLPSPPPPATAAVAATTSSNLNS 339


>04_04_0387 + 24869594-24871480
          Length = 628

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = +3

Query: 294 NEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAARAGTFGK 473
           +EK+ + QW Q + + +K  ++    +  + A+  + NR R    K ++++ ARA T   
Sbjct: 501 SEKYWDEQWKQAMKSSDKMEKLV---KTSIEASN-EYNRRRMQQEKEMELRMARANTMVM 556

Query: 474 K 476
           K
Sbjct: 557 K 557


>05_07_0031 - 27183252-27183317,27183542-27184282
          Length = 268

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 184 GTPLPGPSTSARVWSITSTTLTNFPFKGPSATRATRPGSTYRAKG 50
           G P P P T A     T   +   P  G +ATR  R  S++R  G
Sbjct: 24  GQPPPPPPTPAHRLPPTVLPVVALPAGGDAATRDRRRSSSHRRGG 68


>01_04_0054 - 15456668-15459691
          Length = 1007

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 138 IDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTA--PTRLVRKAWTDAKL 293
           +DQ  AL D    G+PR   R+ ++  T FR+++ +            WTD +L
Sbjct: 513 VDQIWALYDDR-DGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL 565


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,565,392
Number of Sequences: 37544
Number of extensions: 303037
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)