Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l23f
         (543 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   104   4e-23
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.18 
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.18 
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.23 
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   3.8  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  104 bits (250), Expect = 4e-23
 Identities = 55/131 (41%), Positives = 78/131 (59%)
 Frame = +3

Query: 48  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 227
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 228 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 407
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 408 RARTAVFKSLK 440
           R        LK
Sbjct: 121 RIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 222 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 395
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 396 VKRNRARTAVFKSLKVKAARA 458
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +3

Query: 222 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 395
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 396 VKRNRARTAVFKSLKVKAARA 458
           VK+ ++   + K    K A++
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKS 184


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 309 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 455
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -2

Query: 485 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 372
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 294 NEKWTESQWAQKLANKEKRAQMTDYDRFK 380
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = +2

Query: 278 DRC*TQ*KMDRKSMGPEVSEQREARTNDRLR*VQVNSCTS*EEPCQDCRIQELEGEGCAC 457
           D C    +   K +  +++ Q+E  TN  L+   V   T   + C DCR  E +    AC
Sbjct: 95  DACFVWTEAHSKRIKVKITIQKEVFTNTILQQAVVVEFTVHSQLCDDCRRAEAKDFWRAC 154

Query: 458 WYLRQ 472
             +RQ
Sbjct: 155 VQVRQ 159


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -3

Query: 169 GPSTSARV---WSITSTTLTNFPFKGPSATRATRPGS 68
           GPSTS+ V    S+ +TT    PF  P++ +   PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,487
Number of Sequences: 27780
Number of extensions: 255374
Number of successful extensions: 743
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)