Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l20r
         (692 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   285   5e-77
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   285   5e-77
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   285   5e-77
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   285   5e-77
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    31   1.5  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    31   1.5  
AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p pro...    31   1.5  
AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH0603...    31   1.5  
AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA...    31   1.5  
AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-P...    29   6.0  

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  285 bits (698), Expect = 5e-77
 Identities = 147/209 (70%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
 Frame = -3

Query: 690 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 511
           APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVG
Sbjct: 109 APARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168

Query: 510 ASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLA 331
           ASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L+
Sbjct: 169 ASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLS 228

Query: 330 IGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXX 154
           +GYPTIASAPHSIANGFKNLL               IKE+IKDPSKF             
Sbjct: 229 VGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAG 288

Query: 153 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 67
                              DDDMGFGLFD
Sbjct: 289 GATEKKEEAKKPESESEEEDDDMGFGLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  285 bits (698), Expect = 5e-77
 Identities = 147/209 (70%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
 Frame = -3

Query: 690 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 511
           APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVG
Sbjct: 109 APARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168

Query: 510 ASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLA 331
           ASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L+
Sbjct: 169 ASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLS 228

Query: 330 IGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXX 154
           +GYPTIASAPHSIANGFKNLL               IKE+IKDPSKF             
Sbjct: 229 VGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAG 288

Query: 153 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 67
                              DDDMGFGLFD
Sbjct: 289 GATEKKEEAKKPESESEEEDDDMGFGLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  285 bits (698), Expect = 5e-77
 Identities = 147/209 (70%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
 Frame = -3

Query: 690 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 511
           APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVG
Sbjct: 109 APARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168

Query: 510 ASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLA 331
           ASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L+
Sbjct: 169 ASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLS 228

Query: 330 IGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXX 154
           +GYPTIASAPHSIANGFKNLL               IKE+IKDPSKF             
Sbjct: 229 VGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAG 288

Query: 153 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 67
                              DDDMGFGLFD
Sbjct: 289 GATEKKEEAKKPESESEEEDDDMGFGLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  285 bits (698), Expect = 5e-77
 Identities = 147/209 (70%), Positives = 156/209 (74%), Gaps = 1/209 (0%)
 Frame = -3

Query: 690 APARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVG 511
           APARPGAIAPL V+IPA NTGLGPEKTSFFQALSIPTKISKGTIEIINDV ILKPGDKVG
Sbjct: 109 APARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVG 168

Query: 510 ASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLA 331
           ASEATLLNMLNISPFSYGL+V QVYDSG+IF+PEILDIKPEDLRAKFQ GVAN+AA+ L+
Sbjct: 169 ASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLS 228

Query: 330 IGYPTIASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXX 154
           +GYPTIASAPHSIANGFKNLL               IKE+IKDPSKF             
Sbjct: 229 VGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAG 288

Query: 153 XXXXXXXXXXXXXXXXXXSDDDMGFGLFD 67
                              DDDMGFGLFD
Sbjct: 289 GATEKKEEAKKPESESEEEDDDMGFGLFD 317


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
            Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = -3

Query: 576  ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 403
            + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 769  LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 827

Query: 402  DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 271
            D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 828  DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 868


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 2/104 (1%)
 Frame = -3

Query: 576 ISKGTIEIINDVHILK--PGDKVGASEATLLNMLNISPFSYGLVVKQVYDSGTIFAPEIL 403
           + K T EI ++ ++ +    D+V       LN  +I  F +G  +   YD G ++   IL
Sbjct: 532 LQKQTKEIASEPNVYEVITNDEVRKVVTLQLND-SICLFKHGKKIIARYDVGDLYTNGIL 590

Query: 402 DIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 271
           D+     R + QAG+ +++ + +A   P      H   + FKN+
Sbjct: 591 DLDQFLQRLELQAGIYDISQIKMA---PWKKIFEHVSIDKFKNM 631


>AY118783-1|AAM50643.1|  993|Drosophila melanogaster GH13756p protein.
          Length = 993

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 675  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 550
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 925  GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 963


>AF145632-1|AAD38607.1| 1225|Drosophila melanogaster BcDNA.GH06032
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 675  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 550
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>AE014134-2033|AAF53072.1| 1225|Drosophila melanogaster CG6230-PA
            protein.
          Length = 1225

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 675  GAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEII 550
            GA A L +++   +TGL PE T FF+ +  PT   K  + ++
Sbjct: 1157 GASAALVILL---STGLAPELTEFFEIIDFPTDFRKTLLGVL 1195


>AE014297-2608|AAF55620.3| 1788|Drosophila melanogaster CG31043-PA,
           isoform A protein.
          Length = 1788

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 434 SYTCLTTRPYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPF 571
           +Y+C T   Y +  M + LR +  E P++ PG  + TSL  S   F
Sbjct: 824 AYSCDTEGYYTSFHMDSGLRTLKEEEPSVMPGTPLQTSLHTSSYSF 869


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,493,610
Number of Sequences: 53049
Number of extensions: 562964
Number of successful extensions: 1283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1275
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)