Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12l20f
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 189 2e-48
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 188 2e-48
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 188 2e-48
12_01_0032 - 266954-267079,267204-267245,267290-267366,267450-26... 54 1e-07
11_01_0033 - 251730-251855,252068-252144,252228-252318,252644-25... 54 1e-07
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 35 0.055
06_01_0080 + 644021-645463 33 0.22
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 31 0.52
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 29 3.6
03_05_0968 + 29277122-29277445,29278389-29278505,29278957-292791... 29 3.6
03_04_0243 + 19298293-19299117 28 4.8
11_01_0355 + 2679561-2680985,2681183-2682295 28 6.3
10_08_0406 - 17688069-17690643,17691065-17691132 28 6.3
07_03_0196 + 14995224-14995489,14995859-14995877,14996703-149968... 28 6.3
03_05_0804 + 27835508-27835805,27836372-27836421,27837306-278379... 28 6.3
02_03_0134 - 15596379-15597689 28 6.3
11_08_0037 + 27859867-27860382,27860471-27861440,27861647-278619... 27 8.4
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 27 8.4
08_02_1369 - 26445725-26445812,26446443-26446529,26446720-264469... 27 8.4
05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225 27 8.4
03_05_0907 + 28678909-28679253 27 8.4
02_01_0152 - 1070249-1070296,1070443-1070515,1070601-1070671,107... 27 8.4
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 189 bits (460), Expect = 2e-48
Identities = 94/165 (56%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +3
Query: 99 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 278
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 279 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 452
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 453 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 587
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 188 bits (459), Expect = 2e-48
Identities = 94/165 (56%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +3
Query: 99 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 278
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 279 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 452
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 453 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 587
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 188 bits (459), Expect = 2e-48
Identities = 94/165 (56%), Positives = 119/165 (72%), Gaps = 2/165 (1%)
Frame = +3
Query: 99 REDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMR 278
+ KA K Y K+ QLLDEY K I ADNVGS Q+Q+IR LRG SIVLMGKNT++R
Sbjct: 4 KRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIR 63
Query: 279 KAIKDHLDN--NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 452
+ IK H DN N +L+P + GNVG +FT+GDL EVR+++ + KV APAR G +AP+
Sbjct: 64 RCIKVHADNTGNKDFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVD 123
Query: 453 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 587
VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GD
Sbjct: 124 VVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGD 168
>12_01_0032 -
266954-267079,267204-267245,267290-267366,267450-267540,
267864-267924,268021-268079,268176-268266,268481-268698,
268818-268824,269013-269148,270064-270307
Length = 383
Score = 53.6 bits (123), Expect = 1e-07
Identities = 44/172 (25%), Positives = 76/172 (44%), Gaps = 3/172 (1%)
Frame = +3
Query: 69 SPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS- 245
S TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+ SS
Sbjct: 143 SSAVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLKSSSR 202
Query: 246 IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 422
I L GK M + D L KL ++G+ G FT +V E +
Sbjct: 203 IFLAGKKVMQIALGRSPADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFEEHDF 262
Query: 423 ARPGAIAPLSVVI-PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 575
AR G+IA +V + E F + +P +++KG +E++ D HI+
Sbjct: 263 ARTGSIATETVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGAVELVAD-HIV 313
>11_01_0033 -
251730-251855,252068-252144,252228-252318,252644-252704,
252800-252858,252955-253045,253238-253406,253760-253787
Length = 233
Score = 53.6 bits (123), Expect = 1e-07
Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 3/176 (1%)
Frame = +3
Query: 57 KFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLR 236
K R+ TLS+ ++ K I ++ Y ++ DN+ +Q+++ +R L+
Sbjct: 3 KSKRNRPVTLSKTKKKPGLERKGKVVTDIKDAVEHYANAYVFTYDNMRNQKLKDLREQLK 62
Query: 237 GSS-IVLMGKNTMMRKAIKDHLDN-NPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENK 410
SS I L GK M + D L KL ++G+ G FT +V E +
Sbjct: 63 SSSRIFLAGKKVMQIALGRSSADEAKTGLHKLSKFLQGDTGLFFTNLPRDDVERLFREFE 122
Query: 411 VQAPARPGAIAPLSVVI-PAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 575
AR G+I +V + E F + +P +++KG +E++ D HI+
Sbjct: 123 EHDFARTGSIVTETVELKEGPLEQFTHEMEPFLRKQGLPVRLNKGAVELVAD-HIV 177
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 34.7 bits (76), Expect = 0.055
Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Frame = +3
Query: 225 ISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL-LPH--IKGNVGFVFTRGDLVEVRDK 395
I L + L+ + ++ L N AL+KL LPH ++GN+GF+ + + ++ D
Sbjct: 372 IGLLQKLVYLLLSANQLSGSVPRTLGNIAALQKLVLPHNNLEGNMGFLSSLSECRQLEDL 431
Query: 396 LLENKVQAPARPGAIAPLSV----VIPAHN--TGLGPEKTSFFQALSI 521
+L++ A P + LS I HN G PEK S +L +
Sbjct: 432 ILDHNSFVGALPDHLGNLSARLISFIADHNKLAGSLPEKMSNLSSLEL 479
>06_01_0080 + 644021-645463
Length = 480
Score = 32.7 bits (71), Expect = 0.22
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = -1
Query: 563 IVDDFNSTL*NLGRDRKSLEERGLLWTEAGVVGGND 456
I+D N N R K++EERGLL+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 31.5 bits (68), Expect = 0.52
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Frame = +3
Query: 309 PALEK-LLPHIKGN---VGFVFTRGDLVEV--RDKLLENKVQAPARPGAIAPLSVVIPA 467
PAL+K L H K VG + T GDL + + L+++KV P PGA+ +S + PA
Sbjct: 131 PALDKDALWHFKPEKLGVGDIITGGDLYAIVNENTLMQHKVALP--PGAMGKISYIAPA 187
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 28.7 bits (61), Expect = 3.6
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +3
Query: 24 PHGSRAF---CLVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPK 170
PH S A CL L+F T R R K T K + II++L+ YP+
Sbjct: 802 PHASSADIDKCLFLEFLMLMTCTTIRNSRSFKFTHKKFGYWMIIEMLNSYPR 853
>03_05_0968 +
29277122-29277445,29278389-29278505,29278957-29279114,
29279678-29279727,29279968-29280161,29280867-29281049,
29281152-29281270,29281383-29281522,29281857-29281937,
29282286-29282389
Length = 489
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 365 GEHEANVALDVWQQFLEGWIVVQVVFDGFAHH 270
G HEA+ L W+ + GW + F GFA H
Sbjct: 189 GNHEASNYL--WELYYGGWAAPNIYFLGFAGH 218
>03_04_0243 + 19298293-19299117
Length = 274
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = -2
Query: 460 MTTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPTLPLMCGNSFS 317
+ TD+ + APG A A + S SRTS +P ++ PT P +S +
Sbjct: 172 VVTDSLSRAPGAAWAAAMAPTSWSRTS--APPASSSPTSPRRARSSLT 217
>11_01_0355 + 2679561-2680985,2681183-2682295
Length = 845
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +1
Query: 298 WTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRTKSKL 420
W ++ HTS TL+ SP+ +S+ T+C+ + +
Sbjct: 480 WNPMRNGSAPHHTSELTLSFSSPSPSSISGYTSCYNNNNMM 520
>10_08_0406 - 17688069-17690643,17691065-17691132
Length = 880
Score = 27.9 bits (59), Expect = 6.3
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 140 DHPTLGRVPKMFHRGCR*RGLATDAA-DPYLATWLQYRAHGKKHNDAQSHQR 292
D P R ++FHR R RG A D A D W+ + ND Q H +
Sbjct: 789 DDPAARRGARLFHR-LRRRGPAFDKAWDELARFWVHLVVYLAPSNDVQGHAK 839
>07_03_0196 +
14995224-14995489,14995859-14995877,14996703-14996839,
14998365-14998457,15001597-15001932,15003035-15003503
Length = 439
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/43 (27%), Positives = 18/43 (41%)
Frame = -1
Query: 437 GTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGW 309
G +WS F +LN +S H+ V L+ W + W
Sbjct: 197 GNAENWSSQGDKDDFYNELNTISEARHKNLVKLEGWCCHINAW 239
>03_05_0804 +
27835508-27835805,27836372-27836421,27837306-27837998,
27838077-27838388,27838528-27838698
Length = 507
Score = 27.9 bits (59), Expect = 6.3
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 571 MCTSLMISIVPFEILVGIERAWKKEVFSGPRPVLWAGMTTD 449
+CT L I+ L+G+ +A+ V SGP P G T D
Sbjct: 330 ICTGLGIAPRSIGDLIGVVKAYTTRVGSGPFPTELLGKTGD 370
>02_03_0134 - 15596379-15597689
Length = 436
Score = 27.9 bits (59), Expect = 6.3
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = +1
Query: 175 SSWVPITWARNRCSRSVSRYVAPVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLA 354
S W P ARNR S+ ++R A S + +K+ ++P + T +AT
Sbjct: 114 SVWPPALTARNRSSKDMNR-TAKSSSAMQKSNLSSRPGVDKMAASSAKQ---RTQKATPG 169
Query: 355 SCSPAET-SLRSVTNCWRTKSKLQLVLVPLPHCQSSFPPTTP 477
+ + +T ++ SV T K V +P Q + P+ P
Sbjct: 170 ALAGGKTQAVPSVRAPGTTTKKTMGVANSVPSIQRTSIPSRP 211
>11_08_0037 +
27859867-27860382,27860471-27861440,27861647-27861991,
27862074-27862693
Length = 816
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 321 KLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAP 422
KLLP VGFV RG V+ +K+++ P
Sbjct: 464 KLLPLDANKVGFVNVRGPHVQAPEKIMDGDYTGP 497
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +3
Query: 162 YPKCFI--VGADNVGSQQMQQIRISLRGSSIV 251
Y KC I VG DN+ Q MQQ R SL I+
Sbjct: 1292 YTKCLIISVGRDNIPWQWMQQNRTSLETLEIL 1323
>08_02_1369 -
26445725-26445812,26446443-26446529,26446720-26446928,
26447501-26447583,26447672-26447720,26447800-26447959,
26448795-26448891,26449424-26449535,26449637-26449702,
26450135-26450206,26450413-26450487,26451139-26451266,
26451551-26451772,26452084-26452355,26452447-26452543,
26452633-26452738,26454834-26455220
Length = 769
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 332 WQQFLEGWIVVQVVFDGFAHHCV 264
W FLEGW V F+G A H V
Sbjct: 356 WSPFLEGWNSPAVQFEGPAVHVV 378
>05_03_0195 - 9560885-9561435,9561553-9561639,9562199-9563225
Length = 554
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +3
Query: 120 KSNYFVKIIQLLDEYPKCF 176
+++Y VKII+LL EY CF
Sbjct: 68 RADYKVKIIELLKEYVDCF 86
>03_05_0907 + 28678909-28679253
Length = 114
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 481 RPVLWAGMTTDNGAMAPGRAGA 416
RP+L NGA APG AGA
Sbjct: 53 RPLLHGSAAAANGASAPGNAGA 74
>02_01_0152 -
1070249-1070296,1070443-1070515,1070601-1070671,
1070768-1070874,1071836-1072007
Length = 156
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +3
Query: 261 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLE 404
K T RK HL N AL K+ V +G L+E+ D+L++
Sbjct: 86 KVTGKRKRNAQHLQENSALCKVCTSSNSFVVRCCVKGSLLEINDRLIK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,147
Number of Sequences: 37544
Number of extensions: 415266
Number of successful extensions: 1181
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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