Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l20f
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   248   2e-66
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    58   5e-09
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical ...    28   4.3  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical pr...    27   9.9  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   9.9  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   9.9  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  248 bits (608), Expect = 2e-66
 Identities = 110/165 (66%), Positives = 139/165 (84%)
 Frame = +3

Query: 93  MGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTM 272
           M RED++TWK+NYF K+++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM
Sbjct: 1   MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTM 60

Query: 273 MRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLS 452
           +RKA++ HL  NP+LEKLLPHI  NVGFVFT+ DL E+R KLLEN+  APA+ GAIAP  
Sbjct: 61  IRKALRGHLGKNPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCD 120

Query: 453 VVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 587
           V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GD
Sbjct: 121 VKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGD 165


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 58.0 bits (134), Expect = 5e-09
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 3/177 (1%)
 Frame = +3

Query: 66  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSS 245
           R    +L+++ ++ K T K+N   ++   +D+Y   FI    N+ S +   IR   + +S
Sbjct: 6   RDKNVSLTKVKKKTKDT-KNNLVNEVRASVDQYKNLFIFTIANMRSTRFIAIRQKYKENS 64

Query: 246 IVLMGKNTMMRKAIKDHLDNNPA--LEKLLPHIKGNVGFVFTRGDLVEVRDKLLENKVQA 419
               GKN ++  A+     +  A  L K    +KG  G +FT     EV  +  E   + 
Sbjct: 65  RFFFGKNNVISIALGKQKSDEYANQLHKASAILKGQCGLMFTNMSKKEVEAEFSEASEED 124

Query: 420 PARPGAIAPLSVVIP-AHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGD 587
            AR G +A  +VV+P    +          + L +PTK+ KG I +     + K G+
Sbjct: 125 YARVGDVATETVVLPEGPISQFAFSMEPQLRKLGLPTKLDKGVITLYQQFEVCKEGE 181


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/56 (23%), Positives = 21/56 (37%)
 Frame = +1

Query: 241 PVSCSWEKTQ*CAKPSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTNCWRT 408
           P  C+  +   C      T   ++P+  C H +  T   CSP +        C+ T
Sbjct: 109 PAGCAMVRPSGCMDSPTMTGCELKPT--CIHVNACTTTKCSPGKKCALHTVQCFTT 162


>U53154-2|AAC25856.1|  358|Caenorhabditis elegans Hypothetical
           protein C33G8.12 protein.
          Length = 358

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/38 (39%), Positives = 25/38 (65%)
 Frame = +3

Query: 48  LVLKFHRSPYATLSRMGREDKATWKSNYFVKIIQLLDE 161
           L+ K   S ++ +SR+ +EDK +  SN+++K  QLL E
Sbjct: 156 LLWKLGESIFSDVSRLSKEDKNSMISNFYIK-WQLLME 192


>AC006770-2|AAF60593.1| 1145|Caenorhabditis elegans Hypothetical
           protein Y46B2A.3 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 457 TTDNGAMAPGRAGAWTLFSNSLSRTSTRSPRVNTKPT 347
           TT      P  AG WT+ +N ++R  TR P    +PT
Sbjct: 192 TTRGFTQRPTAAG-WTIRANGITRGQTRVPGTTREPT 227


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +3

Query: 396 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 545
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


>Z19158-1|CAA79574.1|  788|Caenorhabditis elegans Hypothetical
           protein T23G5.1 protein.
          Length = 788

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
 Frame = +3

Query: 111 ATWKSNYFVKIIQLLDEYP---KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRK 281
           A W  + F+K ++   E+     C   G D+   ++ + +         V   + T+  +
Sbjct: 337 ALWIPDLFMKRVEKDQEWSLMCPCECPGLDDCWGEEFEALYAKYEAEGRV---RKTVKAR 393

Query: 282 AIKDHLDNNPALEKLLPHI--KGNVGFVFTRGDLVEVRDKLLENKVQAPARPGAIAPLSV 455
            + +H+ +N  +E  LP+I  K        + +L  ++   L  ++   + P  IA  ++
Sbjct: 394 KLWEHIVSNQ-IETGLPYITYKDAANRKSNQQNLGTIKCSNLCTEIIEYSAPDEIAVCNL 452

Query: 456 VIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVH 569
              A N  + PEK   F  L+  TK+    +  I DV+
Sbjct: 453 ASIALNRYVTPEKKFDFVKLAEVTKVITRNLNKIIDVN 490


>Z81522-2|CAB04238.1|  415|Caenorhabditis elegans Hypothetical
           protein F32B4.1 protein.
          Length = 415

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/61 (32%), Positives = 28/61 (45%)
 Frame = -1

Query: 440 NGTRTSWSLDFVLQQFVTDLNEVSAGEHEANVALDVWQQFLEGWIVVQVVFDGFAHHCVF 261
           NGTR       +L     DL E S   HE+   LDVW++ L      Q +  G++ H + 
Sbjct: 233 NGTRAP-----LLSSSARDLRE-SREPHESGWNLDVWKRNLNECRKGQYLLHGYSGHGIL 286

Query: 260 S 258
           S
Sbjct: 287 S 287


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 66  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 236
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 285 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 339

Query: 237 GSSIVLMGKNTMMRKAIKD 293
           G    L G+N ++ K I+D
Sbjct: 340 GKMADLEGRNLLLEKQIED 358


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +3

Query: 66  RSPYATLSRMGREDKATWKSNYFVKIIQLLDEYPKCFIVGADNVGSQQMQQIRISL---R 236
           RS Y  +S   R D  +W   Y +K+ ++  +  +  +    N   ++++++R +L   R
Sbjct: 268 RSEYDHVSNTTRTDIESW---YKLKVQEIHTQNSRNCL--EQNYAREEVKRLRTTLGDMR 322

Query: 237 GSSIVLMGKNTMMRKAIKD 293
           G    L G+N ++ K I+D
Sbjct: 323 GKMADLEGRNLLLEKQIED 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,910
Number of Sequences: 27780
Number of extensions: 321004
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)