Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l19r
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.9  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   5.0  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   5.0  
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p...    26   6.6  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   8.7  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   8.7  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = -2

Query: 724 STPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGAR-----TTTPR--PDHF 566
           ++PP +++ D     S  D P    N+S    ++  ++Q    R     TT+P+  P+  
Sbjct: 379 NSPPSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPH 438

Query: 565 NESIMTESRLVLRDPTPP 512
           +ESI +++R       PP
Sbjct: 439 SESI-SDTRPSTPRKVPP 455


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 682 PSADDFPHGMPNNSPP--RNIKTYRSQGDGARTTTP 581
           PSA  FP  +PN+  P  +NI +  S+      +TP
Sbjct: 46  PSATSFPSALPNSENPVIQNISSSSSEPHHTSQSTP 81


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 319 IKKYPDNIVT*NYLYRIC*ACDVTSVNLLEIIYP 218
           I K+PD   T N + +IC    V ++  L+I++P
Sbjct: 245 IPKFPDPPYTDNEVRKICYVKPVKNLRRLDIVFP 278


>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 485

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/41 (36%), Positives = 17/41 (41%)
 Frame = +3

Query: 444 NFTIWRRKCTNSSAVESPSPLPIGGVGSRSTRRDSVIIDSL 566
           N  IW     N SAV      P+GG    S   D  I +SL
Sbjct: 296 NRLIWLDNMFNLSAVAHRDAWPLGGFRGESDLDDEYIYESL 336


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -2

Query: 598 ARTTTPRPDHFNESIMTESRLVLRDPTPPIGNGEGLSTAEELVHLR-RQIVKLNR 437
           A+ +   PDHF E      ++          +GEG+  A   + LR  Q+  +N+
Sbjct: 157 AKVSLLGPDHFQEHFERSEKVAESTNAKAKSDGEGVMNANAALQLRASQLAAINQ 211


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 20/68 (29%), Positives = 29/68 (42%)
 Frame = -2

Query: 424 IEAEQLQRQQKEKIAYAIGIAYMLFKVIAWLNRS*IKKYPDNIVT*NYLYRIC*ACDVTS 245
           +E +   R QKE  +  + +  +   VI  LNR     Y     T  Y + IC     T 
Sbjct: 439 MELQWNTRSQKETSSTVLLLHMLYHSVIIILNRPSDDNYLKLDNTERYTFEICWKSAKTI 498

Query: 244 VNLLEIIY 221
           V LL+I +
Sbjct: 499 VQLLKIYF 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,486
Number of Sequences: 5004
Number of extensions: 55163
Number of successful extensions: 114
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)