Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l19r
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>AC091125-5|AAK27884.2|  297|Caenorhabditis elegans Hypothetical
           protein Y67D2.7 protein.
          Length = 297

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 2/106 (1%)
 Frame = -2

Query: 718 PPRIITLDQHY-FPSADDFPH-GMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMTE 545
           PP    LD H   P+A   P  GMP+ +   ++ +Y   GD     +  P   + +    
Sbjct: 59  PPAPKRLDDHSPSPAAFRTPVIGMPHAASTTSLVSYSGDGDDDDEDSSEPPKISGATPIS 118

Query: 544 SRLVLRDPTPPIGNGEGLSTAEELVHLRRQIVKLNRRVMSIEAEQL 407
               +R+P PP      + + EE   + R I + N  ++ +  +++
Sbjct: 119 E---IREPAPPPRQSRDVESDEEQELIDRAIKEGNEAILRMNIDEI 161


>Z81117-4|CAB03319.1|  249|Caenorhabditis elegans Hypothetical
           protein T06E6.10 protein.
          Length = 249

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 464 TTPNCEVKSTCYVYRS*TTSKATEGKNC 381
           T   CE+K TC    + TT+K + GK C
Sbjct: 125 TMTGCELKPTCIHVNACTTTKCSPGKKC 152


>Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 694 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 575
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = -2

Query: 694 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 575
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,940,928
Number of Sequences: 27780
Number of extensions: 316364
Number of successful extensions: 744
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)