Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l19f
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.2  
SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like protein|Schi...    26   3.8  
SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyc...    26   5.1  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.7  
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    25   8.9  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     25   8.9  
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa...    25   8.9  
SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr 3...    25   8.9  

>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
 Frame = +3

Query: 405 STPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGAR-----TTTPR--PDHF 563
           ++PP +++ D     S  D P    N+S    ++  ++Q    R     TT+P+  P+  
Sbjct: 379 NSPPSLLSTDNKIPESGSDHPSSQDNSSKASLVENSQTQSSTPRKPLPTTTSPKVNPEPH 438

Query: 564 NESIMTESRLVLRDPTPP 617
           +ESI +++R       PP
Sbjct: 439 SESI-SDTRPSTPRKVPP 455


>SPBC31A8.01c |cwl1|rtn1, SPBC651.13c|reticulon-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +3

Query: 447 PSADDFPHGMPNNSPP--RNIKTYRSQGDGARTTTP 548
           PSA  FP  +PN+  P  +NI +  S+      +TP
Sbjct: 46  PSATSFPSALPNSENPVIQNISSSSSEPHHTSQSTP 81


>SPBC1778.01c |zuo1|mpp11, SPBC30D10.01|zuotin |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 442

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 220 MMKQLPMEWFQVGIMLMRNLT*-RYQKGS*LLDKTNML-VLKHHPEK 354
           M++  P EW Q     +  L+  RY+  +  + K ++  VLKHHP+K
Sbjct: 85  MLRADPKEWKQQDHYAVLGLSKYRYKADTEQIKKAHLKKVLKHHPDK 131


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = +3

Query: 339  APPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDF 464
            +P  EI   +A LP D   VRV     I  L  HYF  A+ +
Sbjct: 2073 SPNEEIDA-SAKLPMDMPPVRVRKSSFISKLKPHYFMDAESY 2113


>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 237 NGMVSGWDYANEKFDMKVPERIL 305
           NG +  WD ANE FD  +   I+
Sbjct: 78  NGPIHHWDIANELFDTALGVEII 100


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +3

Query: 447 PSADDFPHGMPNNSPPRNIKTYRSQGD 527
           P+ DDF H  PNN    +I T+ S  D
Sbjct: 218 PATDDFSHNKPNNQ--ISISTFYSSLD 242


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 157 VYASSGGYCILLIFIDVKLVSLIYFIWLD 71
           +YA +  + +LL+ + ++LV L Y IW D
Sbjct: 429 LYAPTDAFLLLLLGLLMRLVLLNYGIWHD 457


>SPBC27B12.12c |||CorA family magnesium ion transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +3

Query: 402 VSTPPRIITLDQHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRPDHFNESIMT 581
           VS     + +D+  + S +D P  M +   P   K+  +  D   TT P+P + +++ +T
Sbjct: 249 VSGSDENLPIDKTLYLSVED-PSFMVHPRRPSATKSCSAAVDCPHTTIPKPPYQSDTDLT 307

Query: 582 E 584
           E
Sbjct: 308 E 308


>SPCPJ732.02c |||xylulose kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 255 WDYANEKFDMKVPERI 302
           WD  NEKFD+++ E +
Sbjct: 210 WDIQNEKFDIRLLEEV 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,287
Number of Sequences: 5004
Number of extensions: 63133
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)