Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12l19f
(623 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0010 + 19622430-19622512,19622539-19623082,19623361-196237... 30 1.3
08_02_0550 + 18509365-18509589,18509668-18510644,18510828-185118... 30 1.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.0
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 28 5.2
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000... 28 5.2
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937... 28 6.9
09_03_0124 + 12526572-12526689,12528205-12528392 27 9.2
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017... 27 9.2
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 27 9.2
02_01_0072 - 502785-504038 27 9.2
01_07_0169 + 41650339-41651217 27 9.2
>03_05_0010 +
19622430-19622512,19622539-19623082,19623361-19623767,
19623831-19624167,19624290-19624508,19625522-19625826,
19626128-19626287,19626422-19626547
Length = 726
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/40 (42%), Positives = 18/40 (45%)
Frame = +3
Query: 498 NIKTYRSQGDGARTTTPRPDHFNESIMTESRLVLRDPTPP 617
NI Y QGD R PRP E+I T RDP P
Sbjct: 187 NINGYHPQGDQGRNQ-PRPRTIKEAITTRGGKSTRDPPYP 225
>08_02_0550 +
18509365-18509589,18509668-18510644,18510828-18511802,
18511885-18512142,18512216-18512326,18512418-18512496,
18512595-18512687,18512773-18512958
Length = 967
Score = 29.9 bits (64), Expect = 1.7
Identities = 30/123 (24%), Positives = 48/123 (39%)
Frame = +3
Query: 132 QYPPEEAYTRLISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYANEKFDMKVPERILVI 311
+Y E T ++ +P R DI DD D+ + D PE I+ +
Sbjct: 397 RYKEETGKTIQVATGRAMPGRRFHCQDIPDDYAKEEVRTVNEDHRMYEIDFPTPEDIVYL 456
Query: 312 GQDQHVGTKAPPREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPNNSP 491
G ++IQL + TD +PPRI+ H + D+ P P ++
Sbjct: 457 GDAVDQIILWHKKDIQLGS----TD-------SPPRILRSLCHALRNMDEEPRDPPEDAS 505
Query: 492 PRN 500
PR+
Sbjct: 506 PRH 508
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.1 bits (62), Expect = 3.0
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = +3
Query: 330 GTKAPPREIQLDNAVLPTDPGMVR-VSTPPRIITLDQHYFPSADDFPHGMPNNSPP 494
G PP I P PG + V PP I L H P A P G+ PP
Sbjct: 1096 GVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPP 1151
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +1
Query: 295 KGS*LLDKTNMLVLKHHPEKFNWITLCCQQIRVWSV*ARRHVSLPSINITSLQLMIFHM 471
KGS L KT +L++H ++++W + + R W + H +P++ + S + FH+
Sbjct: 495 KGSPLAAKTVGRLLRNHFDQYHWNRVL--ESREWEMETSNHDIMPALQL-SYDYLPFHL 550
>03_06_0614 -
35099225-35099461,35099545-35099694,35099919-35100066,
35100152-35100231,35100428-35100594,35100692-35100940,
35101025-35102310,35102423-35102544,35102946-35103272
Length = 921
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 489 PPRNIKTYRSQGDGARTTTPRPDHFNESIMTE 584
PPRN + RS GD +R+T R + S+ E
Sbjct: 341 PPRNDHSGRSSGDSSRSTASRKHDDSASLSAE 372
>05_05_0087 -
22291732-22292029,22292967-22293034,22293640-22293723,
22295967-22296010,22296210-22296300,22296452-22296634,
22297594-22297637,22298122-22298355,22298452-22298712,
22298790-22298915,22298993-22299077,22299171-22299244,
22299988-22300186
Length = 596
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -1
Query: 188 RHSHIVTDKASICLFGWILH 129
RHS +VTD ++ FGW L+
Sbjct: 320 RHSAVVTDSGTLLTFGWGLY 339
>09_03_0124 + 12526572-12526689,12528205-12528392
Length = 101
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +3
Query: 516 SQGDGARTTTPRPDHFNESIMTESRLVLRDPTPPIG 623
S G R++TP P + + E + +++P PIG
Sbjct: 5 STAAGGRSSTPPPPMYTDEFALEGKKPVKNPFVPIG 40
>03_06_0742 +
35900505-35900519,35901230-35901281,35901647-35901772,
35902303-35902613,35902745-35902988,35903726-35903976,
35904071-35904277,35904546-35904713,35904798-35905127,
35905266-35905400
Length = 612
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +3
Query: 60 YSGKSNQMK*IKETNFTSININSMQYPPEEAYTRLISHN 176
Y+G +Q K ++E + + ++ YPP++ + HN
Sbjct: 470 YTGADDQAKLLEEPSAEKVGVSEALYPPKKKAGEIGDHN 508
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 27.5 bits (58), Expect = 9.2
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +3
Query: 162 LISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYAN-EKFDMKVPERILVIGQDQHVGTK 338
++ + P+R+ G I G GW + +K + + +V G D+H G K
Sbjct: 502 VVGYGNRYPKRVHHRGASIPKNGVHYGCKGGWKWRETKKPNPNIIVGAMVAGPDRHDGFK 561
Query: 339 APPREIQLDNAVLPTDPGMV 398
+ A L + G+V
Sbjct: 562 DVRKNYNYTEATLAGNAGLV 581
>02_01_0072 - 502785-504038
Length = 417
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -1
Query: 224 IINYITCCLYSLRHSHIVTDKASICLFGWILHTVNIYRCEISFFNLF 84
I+N ++ L SLR SH A+ CL LH + R + LF
Sbjct: 117 ILNAVSLTLASLRGSHRAALTAASCLLAPPLHRAHFGRARRAISRLF 163
>01_07_0169 + 41650339-41651217
Length = 292
Score = 27.5 bits (58), Expect = 9.2
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Frame = +3
Query: 135 YPPEEAYTRLISHNMTVPQRIKATGDIIDDETAPNGMVSGWDYAN-EKFDMKVPERILVI 311
YP +EA L + + + I GD + + A + + W N + V + + +
Sbjct: 28 YPDKEALNALRNSGIAL---ILDVGDQLSNLAASSSNAAAWVRDNISPYYPAVNIKYIAV 84
Query: 312 GQDQHVGTKAP--PREIQLDNAVLPTDPGMVRVSTPPRIITLDQHYFPSADDFPHGMPN 482
G + GT P +++A+ G ++VST + + +Y PSA F + N
Sbjct: 85 GNEVVGGTTESILPAMRNVNSALAAAGIGGIKVSTAVKSDVIANYYPPSAGVFAYTYMN 143
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,418,295
Number of Sequences: 37544
Number of extensions: 425509
Number of successful extensions: 952
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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