Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l19f
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    29   2.0  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    29   2.0  
Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    28   4.7  
Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine rece...    27   8.2  
U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 370 ALSS*ISLGGALVPTCWSCPITKILSGTFMSNF 272
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 370 ALSS*ISLGGALVPTCWSCPITKILSGTFMSNF 272
           A SS +S GGA      + P+T  L+G + SNF
Sbjct: 5   AASSIVSYGGAATSNFLTTPVTPFLAGFYNSNF 37


>Z54237-7|CAB54312.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 435 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 554
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>Z54235-9|CAB54190.2|  645|Caenorhabditis elegans Hypothetical
           protein T11B7.4b protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/40 (35%), Positives = 17/40 (42%)
 Frame = +3

Query: 435 QHYFPSADDFPHGMPNNSPPRNIKTYRSQGDGARTTTPRP 554
           QHY       P  +P+N PP N  +Y        TT  RP
Sbjct: 399 QHYQQHVVQAPPPVPSNPPPSNGSSYTKTSFERTTTETRP 438


>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 4/85 (4%)
 Frame = +3

Query: 345  PREIQLDNAVLPT--DPGMVRVSTP-PRIITLDQHYFPSADDFPHGMPNN-SPPRNIKTY 512
            P    +  A LPT    G   V+TP P ++      F      P  MP    PP    T+
Sbjct: 755  PSTPTISPAPLPTTGSSGGPDVTTPAPPVMVTGPLIFIIPTVIPSTMPTTPEPPTISSTF 814

Query: 513  RSQGDGARTTTPRPDHFNESIMTES 587
                  A   TP P H  +S  T S
Sbjct: 815  TPAATQASPATPTPQHVAQSAPTNS 839


>Z67734-1|CAA91527.2|  279|Caenorhabditis elegans Hypothetical
           protein B0198.1 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 136 YCILLIFIDVKLVSLIYFIWLDLPEYR*EANPSLFFSNRNTFNLD 2
           Y ++LIF  +    LIYF +     Y  E N SL     N +NLD
Sbjct: 99  YLLMLIFSMIMEGCLIYFTFSYHATYEQELNASLPNDILNNYNLD 143


>U88170-9|AAB42243.2|  348|Caenorhabditis elegans Serpentine
           receptor, class h protein51 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -3

Query: 264 HNPN-LKPFHWELFHHQLYHLLPLFF 190
           H+P  +K F W LFH Q + LL   F
Sbjct: 57  HSPKYMKEFKWHLFHLQFWFLLLTIF 82


>U12965-3|AAZ32811.1|  980|Caenorhabditis elegans Hypothetical
           protein F23F12.8 protein.
          Length = 980

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
 Frame = +3

Query: 348 REIQLDNAVLPTDPGMVRVSTP------PRIITLDQHYFPSADDFPHGMPNNSPPRNIKT 509
           R  +  NA   T PG VR +TP       R +   QH    A     GMP+   P     
Sbjct: 203 RNRERGNAPAFTRPGRVRTTTPMSVTHATRFVPGIQHKVTVAPKEVQGMPHTLAPYEKMD 262

Query: 510 YRSQGDGA-RTTTPRPDH---FNESIMTESRLV 596
            R    G    TT  P++   +N   MTE+  +
Sbjct: 263 RRPDSFGVEELTTMTPEYTVRYNGQTMTENEFL 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,847
Number of Sequences: 27780
Number of extensions: 360764
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)