Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18r
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo...    30   0.38 
SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyce...    27   2.7  
SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual      26   4.7  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    26   6.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   8.2  

>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 456

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 166 SYYSYDNLRDNVCIIVLLLCSITDFFLLPSL 258
           S  SYD+L D+V ++  L C +T F   PS+
Sbjct: 77  SIMSYDSLSDDVSVLSFLDCPLTTFETAPSI 107


>SPBC359.03c |||amino acid permease, unknown 8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 103 REILAQHIISSFLFAKHCNILSYYSYDNLRDNVCIIVLLLCSITDFFLLPSLFTTHIIWR 282
           R ++A  ++ SF F  + N  +    D + D V   +L +  +++FF   S+  +HI++R
Sbjct: 401 RPLIAMIVVLSFGFFAYINEANNNGND-ISDTVFDWLLAISGLSNFFTWGSICLSHIMFR 459


>SPCC550.04c |gpi2||pig-C|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 91  YANNREILAQHIISSFLFAKHCNILSYYSYDNLRDNVCIIVLLLCSITDFFL 246
           + +N   +A  I+  F+  K CN  ++ +Y  +  +  +IVL L  ++   +
Sbjct: 111 FVSNVSAVAAFILWDFVLRKPCNNRTFPNYMGIVKSCILIVLTLAGLSPILM 162


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 103 REILAQHIISSFLFAKHCNILSYYSYDNLRDNVCIIVLLLCSITDFFLLPSLFTTHIIWR 282
           R +LA  ++  F F  + N       D + D V   +L L  +++FF   S+   HII+R
Sbjct: 401 RPLLAMIVVLLFGFFAYINEADKNGND-VSDTVFNWLLALSGLSNFFTWGSICLCHIIFR 459


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 433 KHYLLMYSLNALTLHLLTRTQKP 365
           K Y  + +LNA TL LLT++ +P
Sbjct: 676 KDYDFLTNLNATTLSLLTQSNRP 698


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,347
Number of Sequences: 5004
Number of extensions: 52465
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)