Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12l18r
(716 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC101357-1|AAI01358.1| 582|Homo sapiens BTBD9 protein protein. 30 7.2
BC101355-1|AAI01356.1| 544|Homo sapiens BTB (POZ) domain contai... 30 7.2
BC101354-1|AAI01355.1| 544|Homo sapiens BTB (POZ) domain contai... 30 7.2
AL355345-1|CAI43022.1| 227|Homo sapiens protein ( Human DNA seq... 30 7.2
AL033518-1|CAI42590.1| 227|Homo sapiens protein ( Human DNA seq... 30 7.2
AL031905-1|CAI42804.1| 227|Homo sapiens protein ( Human DNA seq... 30 7.2
AK090930-1|BAC03550.1| 258|Homo sapiens protein ( Homo sapiens ... 30 7.2
AK057507-1|BAB71514.1| 544|Homo sapiens protein ( Homo sapiens ... 30 7.2
AB067467-1|BAB67773.1| 642|Homo sapiens KIAA1880 protein protein. 30 7.2
BC053582-1|AAH53582.1| 525|Homo sapiens solute carrier family 3... 30 9.5
BC036458-1|AAH36458.2| 475|Homo sapiens SLC32A1 protein protein. 30 9.5
AY044836-1|AAK98782.1| 525|Homo sapiens vesicular inhibitory am... 30 9.5
AL133519-1|CAC15529.2| 525|Homo sapiens solute carrier family 3... 30 9.5
AK055051-1|BAB70846.1| 525|Homo sapiens protein ( Homo sapiens ... 30 9.5
>BC101357-1|AAI01358.1| 582|Homo sapiens BTBD9 protein protein.
Length = 582
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 375 FECMFTNKTFTLEKGLIVPMENVATIA 401
>BC101355-1|AAI01356.1| 544|Homo sapiens BTB (POZ) domain
containing 9 protein.
Length = 544
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 337 FECMFTNKTFTLEKGLIVPMENVATIA 363
>BC101354-1|AAI01355.1| 544|Homo sapiens BTB (POZ) domain
containing 9 protein.
Length = 544
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 337 FECMFTNKTFTLEKGLIVPMENVATIA 363
>AL355345-1|CAI43022.1| 227|Homo sapiens protein ( Human DNA
sequence from clone RP1-70P1 on chromosome 6 Contains
partof the gene for a novel protein (contains KIAA1880
and FLJ32945). ).
Length = 227
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 20 FECMFTNKTFTLEKGLIVPMENVATIA 46
>AL033518-1|CAI42590.1| 227|Homo sapiens protein ( Human DNA
sequence from clone RP3-322I12 on chromosome 6p22.3-24.1
Contains the 3' end of the gene for a novel protein
(contains ).
Length = 227
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 20 FECMFTNKTFTLEKGLIVPMENVATIA 46
>AL031905-1|CAI42804.1| 227|Homo sapiens protein ( Human DNA
sequence from clone RP3-460D19 on chromosome 6p21.2-22.1
Contains part of the gene for a novel protein (contains
KIAA1880 and).
Length = 227
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 20 FECMFTNKTFTLEKGLIVPMENVATIA 46
>AK090930-1|BAC03550.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ33611 fis, clone BRAMY2016002. ).
Length = 258
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 51 FECMFTNKTFTLEKGLIVPMENVATIA 77
>AK057507-1|BAB71514.1| 544|Homo sapiens protein ( Homo sapiens
cDNA FLJ32945 fis, clone TESTI2007867, weakly similar to
RING CANAL PROTEIN. ).
Length = 544
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 337 FECMFTNKTFTLEKGLIVPMENVATIA 363
>AB067467-1|BAB67773.1| 642|Homo sapiens KIAA1880 protein protein.
Length = 642
Score = 30.3 bits (65), Expect = 7.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 410 FECAYTSSAYTNTKAVLIHMENIKCVA 330
FEC +T+ +T K +++ MEN+ +A
Sbjct: 435 FECMFTNKTFTLEKGLIVPMENVATIA 461
>BC053582-1|AAH53582.1| 525|Homo sapiens solute carrier family 32
(GABA vesicular transporter), member 1 protein.
Length = 525
Score = 29.9 bits (64), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 241 FLLPSLFTTHIIWRRISSNMIYF 309
FLLPSLF ++WR++ + ++F
Sbjct: 470 FLLPSLFHLRLLWRKLLWHQVFF 492
>BC036458-1|AAH36458.2| 475|Homo sapiens SLC32A1 protein protein.
Length = 475
Score = 29.9 bits (64), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 241 FLLPSLFTTHIIWRRISSNMIYF 309
FLLPSLF ++WR++ + ++F
Sbjct: 420 FLLPSLFHLRLLWRKLLWHQVFF 442
>AY044836-1|AAK98782.1| 525|Homo sapiens vesicular inhibitory amino
acid transporter protein.
Length = 525
Score = 29.9 bits (64), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 241 FLLPSLFTTHIIWRRISSNMIYF 309
FLLPSLF ++WR++ + ++F
Sbjct: 470 FLLPSLFHLRLLWRKLLWHQVFF 492
>AL133519-1|CAC15529.2| 525|Homo sapiens solute carrier family 32
(GABA vesicular transporter), member 1 protein.
Length = 525
Score = 29.9 bits (64), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 241 FLLPSLFTTHIIWRRISSNMIYF 309
FLLPSLF ++WR++ + ++F
Sbjct: 470 FLLPSLFHLRLLWRKLLWHQVFF 492
>AK055051-1|BAB70846.1| 525|Homo sapiens protein ( Homo sapiens
cDNA FLJ30489 fis, clone BRAWH2000142, highly similar to
Rattus norvegicus vesicular GABA transporter (VGAT)
mRNA. ).
Length = 525
Score = 29.9 bits (64), Expect = 9.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 241 FLLPSLFTTHIIWRRISSNMIYF 309
FLLPSLF ++WR++ + ++F
Sbjct: 470 FLLPSLFHLRLLWRKLLWHQVFF 492
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,488,131
Number of Sequences: 237096
Number of extensions: 1658835
Number of successful extensions: 1765
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1765
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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