Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18r
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    22   5.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.7  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +2

Query: 317 GLPTKRHT*YFPC 355
           G+P +RH  Y+PC
Sbjct: 205 GVPAERHKKYYPC 217


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 184 YRNCNNLKYCSVLRI 140
           YR C   + CS+LRI
Sbjct: 52  YRPCTKNQQCSILRI 66


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 184 YRNCNNLKYCSVLRI 140
           YR C   + CS+LRI
Sbjct: 101 YRPCTKNQQCSILRI 115


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 163 LSYYSYDNLRDNVCIIVLLLCSITDFFL 246
           ++Y   D    NV +   L+C I DF L
Sbjct: 754 MNYVHRDLAARNVLVNAALVCKIADFGL 781


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,617
Number of Sequences: 438
Number of extensions: 3712
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)