Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18f
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q619L8 Cluster: Putative uncharacterized protein CBG142...    32   8.9  
UniRef50_A4H5D6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  
UniRef50_Q5KE53 Cluster: Putative uncharacterized protein; n=1; ...    32   8.9  

>UniRef50_Q619L8 Cluster: Putative uncharacterized protein CBG14222;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG14222 - Caenorhabditis
           briggsae
          Length = 614

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
 Frame = +3

Query: 363 DYPTLNRHRRR-RWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLDELAVEVR 530
           + P L+R+RR+ R ++    DY+  RHY  RR +   ++ L+ ++    D+   + R
Sbjct: 179 ELPVLSRNRRKLRERVGKYDDYEEDRHYRRRRPFAMRRRALLQRLEDYYDDYEYDFR 235


>UniRef50_A4H5D6 Cluster: Putative uncharacterized protein; n=1;
           Leishmania braziliensis|Rep: Putative uncharacterized
           protein - Leishmania braziliensis
          Length = 2087

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 487 LRYLDCLTSSLLR*GGSHLRPHHRSQFTFHTQCPITC 597
           L  +D LT + +R G    +PHH S  T    CP +C
Sbjct: 282 LACIDALTPASVRNGDGGSKPHHTSAHTHAPVCPFSC 318


>UniRef50_Q5KE53 Cluster: Putative uncharacterized protein; n=1;
           Filobasidiella neoformans|Rep: Putative uncharacterized
           protein - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 179

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 18/56 (32%), Positives = 28/56 (50%)
 Frame = -2

Query: 417 IRNLVAISSYGVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNAVR*QPL*AAGTQE 250
           +RN + ++  G+    GN+ +    FVRHH  N  +   R + +R Q L  A T E
Sbjct: 4   LRNCMGLAKIGIVDAYGNVLME--SFVRHHPANVVNYVTRKSGIRPQDLVGAPTYE 57


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 490,982,578
Number of Sequences: 1657284
Number of extensions: 8583512
Number of successful extensions: 18655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18632
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)