Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18f
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   0.52 
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   6.3  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   8.4  

>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 432 PRHYTERRDYYQNQQDLIPQIFRL 503
           PRH+ ++RDY   Q+ +  Q+F L
Sbjct: 228 PRHWNQKRDYLSGQRGIERQLFEL 251


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 387 GVCLGSGNLFLS*SRFVRHHLQNFQSLFCRHNA 289
           G+  G   + ++ SRF R   + +QSL+ RH +
Sbjct: 655 GLLAGGAKVVVTTSRFSRKVTEFYQSLYTRHGS 687


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +2

Query: 296 WRQKRLWKF 322
           WRQKRLW F
Sbjct: 90  WRQKRLWSF 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,832
Number of Sequences: 5004
Number of extensions: 35916
Number of successful extensions: 88
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)