Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18f
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0146 - 31976538-31978643,31978653-31978751                       32   0.30 
02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     28   4.9  
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229...    27   8.6  

>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -2

Query: 567 KLAAVVGAEVAASLPQQR-ARQAI*ISEGSDPVGFDNSLFFRYNVGGVDNHIRNLVAISS 391
           + AAVVGA+  A+LP    A +A+ +     P GF  ++ +R    G+ +    LVA SS
Sbjct: 37  RAAAVVGADTPAALPHTTIAVEAVPLQPSPSPPGFFKTVSYRQAFSGIAS---ELVAASS 93

Query: 390 YGVCL 376
           +   L
Sbjct: 94  HAPVL 98


>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 537  AASLPQQRARQ-AI*ISEGSDPVGFDNS 457
            A +LP Q  RQ AI + EGS  VG DN+
Sbjct: 1508 AGALPAQHTRQYAINLPEGSSTVGHDNN 1535


>04_03_0869 +
           20421368-20421548,20421781-20422664,20422747-20422905,
           20423008-20423252,20423360-20423453,20423580-20423768
          Length = 583

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 402 QLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 491
           +L  GY +QPP+H+     YY+    L  Q
Sbjct: 45  KLRTGYHFQPPKHWINGPMYYKGLYHLFYQ 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,539,456
Number of Sequences: 37544
Number of extensions: 245730
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)