Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18f
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and trans...    27   7.7  

>U13642-4|AAG00043.2|  687|Caenorhabditis elegans Hypothetical
           protein ZC395.8 protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 378 NRHRRRRWQLNYGYDYQPPRHYTERRDYYQNQQ 476
           NR+   RW  N   DY  PR+Y+ R  + +NQ+
Sbjct: 600 NRNYDERWSRN---DYSNPRNYSNRSFHQRNQR 629


>Z47811-3|CAA87787.2|  723|Caenorhabditis elegans Hypothetical
           protein K02C4.4 protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 474 VGFDNSLFFRYNVGGVDNHIRNLVAISSYG 385
           + F  SLFF+YN+  +DN + + V     G
Sbjct: 472 IPFVRSLFFKYNLSFIDNKLESTVYTDKSG 501


>AF489839-1|AAN09795.1|  723|Caenorhabditis elegans lim and
           transglutaminase domainprotein protein.
          Length = 723

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 474 VGFDNSLFFRYNVGGVDNHIRNLVAISSYG 385
           + F  SLFF+YN+  +DN + + V     G
Sbjct: 472 IPFVRSLFFKYNLSFIDNKLESTVYTDKSG 501


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,395,994
Number of Sequences: 27780
Number of extensions: 207068
Number of successful extensions: 419
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)