Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l18f
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.3  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   5.3  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.2  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 356 RKRLPDPKQTP 388
           R  LPDPK+TP
Sbjct: 201 RGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 356 RKRLPDPKQTP 388
           R  LPDPK+TP
Sbjct: 201 RGMLPDPKKTP 211


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/37 (27%), Positives = 16/37 (43%)
 Frame = +3

Query: 384 HRRRRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQI 494
           H    ++ NY   Y    +   ++ YY+N    I QI
Sbjct: 91  HNNNNYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQI 127


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 421 IINPPDIIPKEET 459
           IINP D+IP   T
Sbjct: 154 IINPEDVIPIRRT 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,669
Number of Sequences: 438
Number of extensions: 2721
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)