Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l07f
         (534 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   5.4  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   9.4  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.4  
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc...    25   9.4  

>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +2

Query: 80   FDLECNCRIYENGLFFLLLKVFCNKHDE 163
            FDL   C+ Y+    F    ++C + DE
Sbjct: 2341 FDLNQRCQFYKKPKLFSCFSIYCREFDE 2368


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 162  SSCLLQKTFSNRKNNPFS*ILQLHSKSKRKLWYHYISN 49
            SS +L+ TF  R ++P   +LQ+  KS    W HYI++
Sbjct: 4560 SSDILRTTFI-RSSSPCYPLLQIVLKSFECPWEHYITD 4596


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 368 IGKWFRKRKHLCRFKS 321
           I KW+R+RK L R KS
Sbjct: 877 IRKWYRRRKGLVRTKS 892


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 19  LFPNFKHYKLIRNIVIPKFAFRFRMQLQNL*KRIIFSVTESFL 147
           LFP   H+  +    IPK A  F   + NL K+  ++   SF+
Sbjct: 67  LFPKKAHFDAVALPPIPKGAPNFLADVLNLLKKKYYATDLSFV 109


>SPBC428.07 |meu6||meiotic chromosome segregation protein
           Meu6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 651

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 19/83 (22%), Positives = 36/83 (43%)
 Frame = +3

Query: 201 VPKTTAVVPLCSGARSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQ 380
           +P T    P  +   + ASE +   GP + ++ T N+ +   +     P  + ++D   +
Sbjct: 381 IPTTEEHFPATTEEVAPASEEKPATGPAEESTSTQNVEQASTQNDNGTPIGQ-IADAIEE 439

Query: 381 MLQELVPPVEKFFQEVNDPAKND 449
            ++     VE+ F E  D A  D
Sbjct: 440 DVKGTAQSVEQAFIEETDIALPD 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,010
Number of Sequences: 5004
Number of extensions: 42165
Number of successful extensions: 105
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)