Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l07f
         (534 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0432 + 3339235-3339915,3340313-3340561,3341071-3341139,334...    30   1.3  
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749           29   2.4  
01_06_1151 + 34937738-34937855,34937959-34939244                       29   2.4  
10_08_0208 + 15841024-15841134,15841171-15841713                       28   4.1  
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    28   4.1  
01_05_0320 - 20874691-20875230,20879337-20879590,20880014-208810...    28   5.4  
01_06_0693 - 31280108-31281271                                         27   7.2  
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    27   9.5  
03_06_0444 - 33979319-33980044                                         27   9.5  

>03_01_0432 +
           3339235-3339915,3340313-3340561,3341071-3341139,
           3341292-3341414,3341526-3341738
          Length = 444

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 291 HSVSVRFELAPLMRQIELRCKAEPPQSFW 205
           HS + RF +APL+R+   R   + P S W
Sbjct: 104 HSYAARFAIAPLLRRTVTRAWYDHPASLW 132


>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
          Length = 587

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 349 KGNTCVGSNRPRKRFRVKEALCLGPFRACASDAAD 245
           K +TCV S +PRK  +  EA  L P     SD  +
Sbjct: 181 KCHTCVQSKQPRKPHKASEARNLAPLELVHSDLCE 215


>01_06_1151 + 34937738-34937855,34937959-34939244
          Length = 467

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 262 ASDAADRAPLQSGTTAVVLGTRQRPPHRTSLAPFIVF 152
           AS  +D     S T++V  G  ++PP RTS AP+  F
Sbjct: 64  ASVFSDDPDTLSRTSSVAYGGGEQPPVRTSSAPYAAF 100


>10_08_0208 + 15841024-15841134,15841171-15841713
          Length = 217

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = -3

Query: 349 KGNTCVGSNRPRKRFRVKEALCLGPFRACASDAAD 245
           K +TCV S +PRK  R  EA  L P     SD  +
Sbjct: 179 KFHTCVQSKQPRKPHREFEARNLAPLELIHSDLCE 213


>02_04_0496 +
           23446039-23446964,23452755-23452845,23452946-23452996,
           23453080-23453206,23453390-23453425,23453443-23453473,
           23453488-23453576,23454341-23454462,23455601-23455778,
           23458343-23458470,23458592-23458658,23459167-23459272,
           23459365-23459473,23459965-23460084,23460187-23460220,
           23460471-23460547,23460640-23460692,23460847-23460898,
           23461270-23461767
          Length = 964

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 65  YQSLRFDLE-CNCRIYENGLFFLLLKVFCNKHDERCQAGPVWRSLPRPQND 214
           Y + RF +E CN   Y++ L   +   F +  DE  Q    WR L  P+N+
Sbjct: 622 YCAKRFHIELCNHEDYDSNLSNAMRSAFYSM-DEDLQLSDAWRELVIPRNN 671


>01_05_0320 -
           20874691-20875230,20879337-20879590,20880014-20881087,
           20881259-20881511,20881548-20882369
          Length = 980

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 340 TCVGSNRPRKRFRVKEALCLGPFRACASDAAD 245
           TCV S +PRK  +  EA  L P     SD  +
Sbjct: 364 TCVQSKQPRKPHKASEARNLAPLELVHSDLCE 395


>01_06_0693 - 31280108-31281271
          Length = 387

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +3

Query: 243 RSAASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPP 404
           R++A  A   +     A FT  L RG  +    + + + +S   RQML+E VPP
Sbjct: 163 RASADPAARPSADTYHALFTALLSRGGGDTMVHYMYMDTVSALFRQMLEEGVPP 216


>06_03_1490 +
           30497980-30498102,30499034-30500156,30500914-30501132,
           30501228-30501454,30501810-30501884,30502250-30502321,
           30502765-30502863,30502975-30503046,30503131-30503245,
           30503455-30503523,30503625-30503952,30504320-30504437,
           30504522-30505448
          Length = 1188

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 236 AAKRNHR-SRFGDEAATATQDQLGTFHRVYYKKLSVTEKIIRFHK 105
           AAK + R  + GD A+  + D+  TF  +  KKL +   I++  K
Sbjct: 618 AAKYDERCKKVGDVASKLSMDE-ATFREIQEKKLEIYNAIVKLQK 661


>03_06_0444 - 33979319-33980044
          Length = 241

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 220 WFRFAAELDLPHQRRKL 270
           W RFAAE+  PH RR+L
Sbjct: 90  WGRFAAEIRDPHLRRRL 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,010,473
Number of Sequences: 37544
Number of extensions: 288608
Number of successful extensions: 919
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)