Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l07f
         (534 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-2855|AAF57579.1|  655|Drosophila melanogaster CG7461-PA...    71   8e-13
AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    31   1.3  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      31   1.3  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    31   1.3  
AY973546-1|AAX84047.1|  962|Drosophila melanogaster midlife cris...    29   3.0  
AY973545-1|AAX84046.1|  962|Drosophila melanogaster midlife cris...    29   3.0  
AY052091-1|AAK93515.1|  445|Drosophila melanogaster SD04057p pro...    29   3.0  
AE013599-1093|AAF58795.2|  960|Drosophila melanogaster CG11763-P...    29   3.0  
AE013599-1092|ABC66064.1|  962|Drosophila melanogaster CG11763-P...    29   3.0  

>AE013599-2855|AAF57579.1|  655|Drosophila melanogaster CG7461-PA
           protein.
          Length = 655

 Score = 71.3 bits (167), Expect = 8e-13
 Identities = 29/72 (40%), Positives = 48/72 (66%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           A   +++    ++ SF  N+FRG    +QVFP+P+ L+ +Q+++   L+ P E+FF +VN
Sbjct: 59  AESNRSKEKASENESFMANIFRGSLVSSQVFPYPDVLTAEQKELTNSLIDPFERFFSDVN 118

Query: 432 DPAKNDENSKIE 467
           D A+ND NSKI+
Sbjct: 119 DAARNDANSKID 130



 Score = 35.5 bits (78), Expect = 0.046
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 460 RLXEGTVAGLWDLGAFGLQVPGELG 534
           ++ + T   LW+LGAFG+QVP E G
Sbjct: 128 KIDDTTSTALWELGAFGIQVPSEFG 152


>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 204 PKTTAVVPLCSGARSAASEA-QARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQ 380
           PK  +V P    AR+AA++A Q+   P  +    +   RGR     V P PEP+  D  +
Sbjct: 152 PKAISVRP----ARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPM--DLER 205

Query: 381 MLQELV--PPVEKFFQEVND 434
            L+ELV  P +     E++D
Sbjct: 206 ELEELVDEPDISSMVTELSD 225


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 204 PKTTAVVPLCSGARSAASEA-QARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQ 380
           PK  +V P    AR+AA++A Q+   P  +    +   RGR     V P PEP+  D  +
Sbjct: 152 PKAISVRP----ARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPM--DLER 205

Query: 381 MLQELV--PPVEKFFQEVND 434
            L+ELV  P +     E++D
Sbjct: 206 ELEELVDEPDISSMVTELSD 225


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
 Frame = +3

Query: 204 PKTTAVVPLCSGARSAASEA-QARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQ 380
           PK  +V P    AR+AA++A Q+   P  +    +   RGR     V P PEP+  D  +
Sbjct: 152 PKAISVRP----ARAAAAKAKQSAMPPPPALVVKVPAPRGRPRKNPVIPKPEPM--DLER 205

Query: 381 MLQELV--PPVEKFFQEVND 434
            L+ELV  P +     E++D
Sbjct: 206 ELEELVDEPDISSMVTELSD 225


>AY973546-1|AAX84047.1|  962|Drosophila melanogaster midlife crisis
           protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           ASE +AR       S T    +    PT     P+   D++ Q  Q+  PP+++  QE N
Sbjct: 77  ASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQ--RDEREQQQQQEAPPLQQDQQE-N 133

Query: 432 DPAKNDE 452
            PA++ E
Sbjct: 134 SPAQDQE 140


>AY973545-1|AAX84046.1|  962|Drosophila melanogaster midlife crisis
           protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           ASE +AR       S T    +    PT     P+   D++ Q  Q+  PP+++  QE N
Sbjct: 77  ASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQ--RDEREQQQQQEAPPLQQDQQE-N 133

Query: 432 DPAKNDE 452
            PA++ E
Sbjct: 134 SPAQDQE 140


>AY052091-1|AAK93515.1|  445|Drosophila melanogaster SD04057p
           protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           ASE +AR       S T    +    PT     P+   D++ Q  Q+  PP+++  QE N
Sbjct: 77  ASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQ--RDEREQQQQQEAPPLQQDQQE-N 133

Query: 432 DPAKNDE 452
            PA++ E
Sbjct: 134 SPAQDQE 140


>AE013599-1093|AAF58795.2|  960|Drosophila melanogaster CG11763-PA,
           isoform A protein.
          Length = 960

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           ASE +AR       S T    +    PT     P+   D++ Q  Q+  PP+++  QE N
Sbjct: 77  ASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQ--RDEREQQQQQEAPPLQQDQQE-N 133

Query: 432 DPAKNDE 452
            PA++ E
Sbjct: 134 SPAQDQE 140


>AE013599-1092|ABC66064.1|  962|Drosophila melanogaster CG11763-PD,
           isoform D protein.
          Length = 962

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = +3

Query: 252 ASEAQARNGPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVEKFFQEVN 431
           ASE +AR       S T    +    PT     P+   D++ Q  Q+  PP+++  QE N
Sbjct: 77  ASETEARENSPHDHSPTPTFHQTAPPPTTSSTAPQ--RDEREQQQQQEAPPLQQDQQE-N 133

Query: 432 DPAKNDE 452
            PA++ E
Sbjct: 134 SPAQDQE 140


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,358,986
Number of Sequences: 53049
Number of extensions: 486047
Number of successful extensions: 1571
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1571
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2012211456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)