Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12l07f
(534 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28943-3|AAT81203.1| 408|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical pr... 66 2e-11
U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical pr... 27 6.4
U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical pr... 27 6.4
U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical pr... 27 6.4
AF039037-1|AAO21431.1| 312|Caenorhabditis elegans Hypothetical ... 27 6.4
Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical p... 27 8.5
Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical pr... 27 8.5
U40424-3|AAL02442.1| 73|Caenorhabditis elegans Hypothetical pr... 27 8.5
>U28943-3|AAT81203.1| 408|Caenorhabditis elegans Hypothetical
protein E04F6.5b protein.
Length = 408
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 234 SGARSAASEAQARN-GPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVE 410
S + +AA +A+ + S SF +NLFRG+ QVFP+P ++D+Q++ L ++ P+E
Sbjct: 20 SHSAAAAKDAKPKKVAAVDSPSFVMNLFRGKAVTDQVFPYPLNMTDEQKETLGMVMSPLE 79
Query: 411 KFFQEVNDPAKNDENSKI 464
K EVND KNDE S I
Sbjct: 80 KMLVEVNDVVKNDETSDI 97
>U28943-2|AAA68357.1| 613|Caenorhabditis elegans Hypothetical
protein E04F6.5a protein.
Length = 613
Score = 65.7 bits (153), Expect = 2e-11
Identities = 33/78 (42%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Frame = +3
Query: 234 SGARSAASEAQARN-GPRQSASFTLNLFRGRFEPTQVFPFPEPLSDDQRQMLQELVPPVE 410
S + +AA +A+ + S SF +NLFRG+ QVFP+P ++D+Q++ L ++ P+E
Sbjct: 20 SHSAAAAKDAKPKKVAAVDSPSFVMNLFRGKAVTDQVFPYPLNMTDEQKETLGMVMSPLE 79
Query: 411 KFFQEVNDPAKNDENSKI 464
K EVND KNDE S I
Sbjct: 80 KMLVEVNDVVKNDETSDI 97
>U58748-9|AAB52969.3| 542|Caenorhabditis elegans Hypothetical
protein ZK180.5a protein.
Length = 542
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 186 GGRCLVPKTTAVVPLCSGARSAASEAQARNGPR 284
GG C P A C GA +AA A A PR
Sbjct: 25 GGGCCQPSQPACANPCGGASAAAYAAPAAGYPR 57
>U58748-8|AAM97986.1| 497|Caenorhabditis elegans Hypothetical
protein ZK180.5b protein.
Length = 497
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 186 GGRCLVPKTTAVVPLCSGARSAASEAQARNGPR 284
GG C P A C GA +AA A A PR
Sbjct: 25 GGGCCQPSQPACANPCGGASAAAYAAPAAGYPR 57
>U58748-7|AAM97987.1| 399|Caenorhabditis elegans Hypothetical
protein ZK180.5c protein.
Length = 399
Score = 27.5 bits (58), Expect = 6.4
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +3
Query: 186 GGRCLVPKTTAVVPLCSGARSAASEAQARNGPR 284
GG C P A C GA +AA A A PR
Sbjct: 25 GGGCCQPSQPACANPCGGASAAAYAAPAAGYPR 57
>AF039037-1|AAO21431.1| 312|Caenorhabditis elegans Hypothetical
protein R02C2.1 protein.
Length = 312
Score = 27.5 bits (58), Expect = 6.4
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 340 TCVGSNRPRKRFRVKEALCLGPF 272
T ++RPRK ++V E LC G F
Sbjct: 7 TSTPTSRPRKEYKVVEHLCKGSF 29
>Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 212 RFGDEAATATQDQLGTFHRVYYKKLSVTEKIIRFHKFCNCILNRNANF-GITIFLINL*C 36
+F +EAAT + + +YKK + EKI +F C++ R+ G+ F +++ C
Sbjct: 21 KFAEEAATILANYIKDAG--FYKKRRLAEKISKFDFNTKCLIIRHIRLVGVDQFPVDI-C 77
Query: 35 L 33
L
Sbjct: 78 L 78
>Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.1 bits (57), Expect = 8.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 212 RFGDEAATATQDQLGTFHRVYYKKLSVTEKIIRFHKFCNCILNRNANF-GITIFLINL*C 36
+F +EAAT + + +YKK + EKI +F C++ R+ G+ F +++ C
Sbjct: 21 KFAEEAATILANYIKDAG--FYKKRRLAEKISKFDFNTKCLIIRHIRLVGVDQFPVDI-C 77
Query: 35 L 33
L
Sbjct: 78 L 78
>U40424-3|AAL02442.1| 73|Caenorhabditis elegans Hypothetical
protein C24A3.2b protein.
Length = 73
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 175 WSCVAVAASSPKRLRWFRFAAELDLPHQRRKLETDRD 285
W CV+ P + F + +P QR KLE D+D
Sbjct: 37 WCCVS-KDDDPTVFAKYGFGPQPRIPSQRSKLEVDKD 72
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,934,737
Number of Sequences: 27780
Number of extensions: 245742
Number of successful extensions: 667
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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