Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l06f
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    29   0.25 
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S...    28   0.58 
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    27   1.3  
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.3  
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo...    25   4.1  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   7.2  

>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 29.5 bits (63), Expect = 0.25
 Identities = 16/62 (25%), Positives = 32/62 (51%)
 Frame = -3

Query: 396 NLNIVSNKVTFANAFTNVEPEDDFSSNQNI*CGLFDCLPFPCSCLSTCDQITDALSNLRQ 217
           NL+ + +  +  +  +N+  ++   S+ +   G+F  +P P   L T    TD+ SN+R+
Sbjct: 291 NLSTLQDNASLTSQGSNLSSQNSGLSSSS--SGIFGRMPIPAQSLDTTMLRTDSNSNIRR 348

Query: 216 LT 211
            T
Sbjct: 349 AT 350


>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 296

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 17/74 (22%), Positives = 31/74 (41%)
 Frame = +1

Query: 85  LIKMASAVAKVPTLINTAITQARPKLNIFMKYARVELAPPKLSELPQIRQGIGNLITSAK 264
           ++ + S V+ VP   N A   ++  L  +    R+ELAP  +     +  G+   I S  
Sbjct: 130 IVNVNSLVSYVPFAFNAAYNASKAALLAYSNTLRIELAPFGVQVTSIMTGGVQTKIQSKP 189

Query: 265 TGAWKRQTVKEATL 306
            G      + E ++
Sbjct: 190 LGTMTEAAIPENSI 203


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 274 WKRQTVKEATLNVLVGAEVIFWFYIGECIGKRHLVGY 384
           WK Q+ +    N  +  E++  F  G+ +G+R +  Y
Sbjct: 81  WKSQSSEAWGRNFFIAVEIVGIFCAGQMVGRRKITPY 117


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 291 DCLPFPCSCLSTCDQITDALSN 226
           DC  FP  CL  C Q  D  SN
Sbjct: 62  DCTIFPVMCLVYCIQFLDKTSN 83


>SPAC637.12c |mst1||histone acetyltransferase
           Mst1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 263 RQEHGKGKQSKRP 301
           ++ HGKGK SKRP
Sbjct: 87  KKAHGKGKSSKRP 99


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -3

Query: 390 NIVSNKVTFANAFTNVEPEDDFSSNQNI 307
           ++  N VTFANAF N     D     N+
Sbjct: 345 SVFHNAVTFANAFMNFGTSSDSFFRDNL 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,022
Number of Sequences: 5004
Number of extensions: 27243
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)