Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fner12l06f
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219... 37 0.007
01_05_0599 - 23550663-23550849,23553236-23553417 29 2.3
12_01_0107 - 843820-846335,846400-846511 28 3.1
11_06_0125 - 20356683-20357071,20359531-20362285 28 3.1
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 28 4.0
05_06_0195 + 26291126-26291316,26292432-26292618 28 4.0
12_01_0684 + 5828947-5829012,5831123-5832103,5832200-5832326,583... 27 5.3
03_01_0490 + 3711009-3711383,3712104-3712202,3713209-3713461,371... 27 5.3
08_02_0246 + 14745367-14745372,14745452-14746106,14746299-147472... 27 9.3
08_01_0525 + 4564885-4565221,4565337-4565476,4565582-4565677,456... 27 9.3
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 27 9.3
>10_06_0087 -
10520708-10520823,10521041-10521130,10521571-10521901,
10522248-10522409,10522506-10522726,10523852-10524056
Length = 374
Score = 37.1 bits (82), Expect = 0.007
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = +1
Query: 163 NIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWK-RQTVKEATLNVLVGAEVIFW 339
N+F+ + L P+ S+ PQ + N I +KTG WK TV+ T V+VG +V
Sbjct: 53 NVFVGM-NISLIDPRNSDDPQSPKNGENAIIKSKTGYWKVVGTVRIPTSTVIVGMKVSLD 111
Query: 340 FYIGEC-IGKR 369
Y GE GKR
Sbjct: 112 HYEGEAPSGKR 122
>01_05_0599 - 23550663-23550849,23553236-23553417
Length = 122
Score = 28.7 bits (61), Expect = 2.3
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +1
Query: 274 WK-RQTVKEATLNV--LVGAEVIFWFYIGECIGKRH-LVGYDV 390
WK R+ +K L + L G E+ WF +GE +G+ + GY V
Sbjct: 80 WKNRKELKVEDLGIVTLFGVELYAWFCVGEIVGRGFTITGYKV 122
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 387 IVSNKVTFANAFTNVEPEDDFSSNQ--NI*CGLFD 289
+V K+TFA+ V + SN+ NI C LFD
Sbjct: 99 VVQEKITFASEEKTVSTSNSIDSNEHVNIECSLFD 133
>11_06_0125 - 20356683-20357071,20359531-20362285
Length = 1047
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3
Query: 399 KNLNIVSNKVTFANAFTNVEPEDDFSSNQNI*CGLFDCLPFPCSC 265
K ++IV NK+ + E DDFSS Q I C L L SC
Sbjct: 970 KVMDIVDNKLCLGIDQHDPETTDDFSSKQKIDC-LISLLRLGLSC 1013
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = +1
Query: 199 PPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAE 327
P + L ++ + +G + + KTG WK ++EA + GA+
Sbjct: 320 PAEFQRLQEVERHLGRCMDARKTGDWK-SALREADAAIANGAD 361
>05_06_0195 + 26291126-26291316,26292432-26292618
Length = 125
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +1
Query: 277 KRQTVKEATLNVLVGAEVIFWFYIGECIGKRH-LVGYDV 390
K V+ A + L G E+ WF +GE +G+ GY V
Sbjct: 87 KDLNVEHAGVAALFGIELYAWFCVGEIVGRGFTFTGYHV 125
>12_01_0684 +
5828947-5829012,5831123-5832103,5832200-5832326,
5832623-5832705,5832752-5832917,5833337-5833399,
5833624-5833733,5834227-5834276,5834528-5834664,
5835180-5835281,5835871-5835988,5836575-5836627,
5836710-5836813,5836910-5836972,5837375-5837503,
5837508-5837605,5838446-5838500,5839260-5839311,
5839996-5840113,5841906-5842035,5842156-5842437
Length = 1028
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = -3
Query: 288 CLPFPCSCLSTCDQITDAL-SNLRQLT*L-GWS 196
C P CS L T +Q+T AL ++L L L GWS
Sbjct: 687 CFPLNCSHLETINQLTGALPTSLGDLPYLEGWS 719
>03_01_0490 +
3711009-3711383,3712104-3712202,3713209-3713461,
3713908-3714090,3714091-3714227,3714511-3714710,
3714797-3714994,3715109-3715271
Length = 535
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 202 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFW--FYIGECIG 363
P +++LP G+ + + G WK +T E +++ V A + W Y+G+ G
Sbjct: 296 PNIADLPTGTAGVWRVSAINEAGGWKDRTTVE-DMDLAVRASLKGWQFLYVGDIRG 350
>08_02_0246 +
14745367-14745372,14745452-14746106,14746299-14747269,
14748123-14749168,14750669-14751473
Length = 1160
Score = 26.6 bits (56), Expect = 9.3
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +1
Query: 235 GIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFWFYIGECIGKR 369
G+GN+ +S GA+K++++ E N+ + I IG+ GKR
Sbjct: 221 GLGNVSSSRSEGAYKKRSLSEFLQNIPSSKQSI----IGDGPGKR 261
>08_01_0525 +
4564885-4565221,4565337-4565476,4565582-4565677,
4566079-4566146,4566542-4566643,4567492-4567630,
4567758-4567898,4568241-4568297,4568400-4568459,
4568866-4568973,4569834-4569994,4570453-4570531,
4571357-4571490,4571846-4571951,4572244-4572432,
4572595-4572822,4573028-4573183,4573491-4573532,
4573752-4573868,4573945-4574121
Length = 878
Score = 26.6 bits (56), Expect = 9.3
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 202 PKLSELPQIRQGIGNLITSAKTGAWKRQTVKEA-TLNVLVGAE 327
PKL LP++R + N + AW RQT+ EA T V++G E
Sbjct: 89 PKL--LPRLRNVLVNAV------AWNRQTITEASTKEVILGTE 123
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 314 RTFSVASLTVCLFHAPVL--ALVIRLPMPC 231
R+ SV S +VC HAP A V P+PC
Sbjct: 51 RSLSVRSASVCYPHAPSTSGAFVADSPLPC 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,337,247
Number of Sequences: 37544
Number of extensions: 174407
Number of successful extensions: 326
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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