Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l06f
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g ...    61   4e-10
Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical pr...    60   7e-10
Z70038-2|CAA93885.2|  399|Caenorhabditis elegans Hypothetical pr...    27   8.4  

>U42830-1|AAC48276.1|  131|Caenorhabditis elegans Atp synthase g
           homolog protein 2 protein.
          Length = 131

 Score = 60.9 bits (141), Expect = 4e-10
 Identities = 24/65 (36%), Positives = 42/65 (64%)
 Frame = +1

Query: 190 ELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIFWFYIGECIGKR 369
           ELAPP+ ++ P I+     + +  +TG +K  +++E  +   V  EV+FWF++GE IG+R
Sbjct: 41  ELAPPRQADWPAIKADWAKVQSFIQTGGYKNLSIREGLVYTAVTLEVVFWFFVGEMIGRR 100

Query: 370 HLVGY 384
           ++ GY
Sbjct: 101 YIFGY 105


>Z81098-3|CAB03179.1|  131|Caenorhabditis elegans Hypothetical
           protein K07A12.3 protein.
          Length = 131

 Score = 60.1 bits (139), Expect = 7e-10
 Identities = 27/78 (34%), Positives = 46/78 (58%)
 Frame = +1

Query: 157 KLNIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWKRQTVKEATLNVLVGAEVIF 336
           +L I     + ELAPP+ +++P I+     L    +T  +   ++KE+ +   V  EV+F
Sbjct: 30  RLAILKAVGKHELAPPRSADIPAIKADWAKLQKFIETKQYVNLSIKESLVYSAVALEVVF 89

Query: 337 WFYIGECIGKRHLVGYDV 390
           WF++GE IG+R++ GY V
Sbjct: 90  WFFVGEMIGRRYIFGYIV 107


>Z70038-2|CAA93885.2|  399|Caenorhabditis elegans Hypothetical
           protein ZK1067.3 protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -3

Query: 390 NIVSNKVT-FANAFTNVEPEDDFSSNQN 310
           +I  N  T   N  + VEPEDDF  +QN
Sbjct: 64  SIAQNSSTALRNPVSQVEPEDDFKIDQN 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,109,328
Number of Sequences: 27780
Number of extensions: 160470
Number of successful extensions: 264
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 264
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)