Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l04r
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    27   2.8  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   4.8  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 516 CRLIHQC*ARMGWIRRENYLRKDCCHLRSVSFH 614
           C  + Q  A++ WIR    LR    H R++SFH
Sbjct: 748 CAWLSQMRAKL-WIRNGTTLRDQAHHYRNLSFH 779


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 240 CSDPAHGSVDSLTDKFAD*NSSNW 311
           CSD    +VDSL ++F D N+S++
Sbjct: 222 CSDAFSEAVDSLRERFVDNNNSDY 245


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 576 ASNSHGGSNPYAPSTGGSGGKSPLD 502
           ++N++  S   APSTGG+  KS LD
Sbjct: 238 STNNYYSSPTMAPSTGGAKPKSDLD 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,370
Number of Sequences: 5004
Number of extensions: 41897
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)