Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l04r
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186...    28   8.8  
03_06_0060 + 31341233-31342009,31342752-31342871,31343401-313435...    28   8.8  

>06_03_0927 +
           26015956-26018230,26018323-26018471,26018550-26018618,
           26018701-26018853,26018927-26019090,26019207-26019354,
           26020348-26020470,26020560-26020647,26020781-26020950
          Length = 1112

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 570 NSHGGSNPYAPSTGGSGG 517
           NS GG  P AP++GG GG
Sbjct: 161 NSDGGPPPPAPTSGGGGG 178


>03_06_0060 +
           31341233-31342009,31342752-31342871,31343401-31343517,
           31343615-31343704,31344279-31344386,31345124-31345306
          Length = 464

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = -2

Query: 329 TTPRTAPIRGVLIRKLIRQAINRTMRR-IRTKIIDKRMRNTTGLP 198
           ++PRTAP++  L+   +   +NR +R+   +K++  R  ++   P
Sbjct: 143 SSPRTAPVKKSLLNGFVSSPLNRPIRQPSPSKLVGSRRMSSPSQP 187


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,457,675
Number of Sequences: 37544
Number of extensions: 279606
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)