Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l04r
         (735 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical pr...    28   7.9  
AF039050-2|AAC47935.1|  499|Caenorhabditis elegans Cytochrome p4...    28   7.9  

>Z75531-4|CAA99805.1|  408|Caenorhabditis elegans Hypothetical
           protein C54D10.4 protein.
          Length = 408

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 264 QNHAQDQNKNYRQTYAQHNWATTRKPVSYGWTVSVTVVLTYLIHQYV 124
           +NHA   +KN  +T A      + KP S   T+    V + L++QY+
Sbjct: 229 KNHAYKYHKNLNETIANDTGKPSVKPRSTNITIKHLPVTSSLMNQYL 275


>U40414-1|AAA81404.2|  543|Caenorhabditis elegans Hypothetical
           protein F53B3.1 protein.
          Length = 543

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 392 PISLRMVSVALSIRDR*WRIQTTPRTAPIRGVLIRKLIRQAINRTMRRIRTKIIDKRM 219
           P  +  V   L++ D    I   P  AP    ++RKLIRQ + R  ++ + + I+K +
Sbjct: 176 PCRIAEVQQTLTLADHQDGIDLPPPNAPTDVRIVRKLIRQKMVR-CKKCKNRFIEKNI 232


>AF039050-2|AAC47935.1|  499|Caenorhabditis elegans Cytochrome p450
           family protein 34A5 protein.
          Length = 499

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 115 NILNILMYQVRQDHSHTNGPPVADG 189
           +ILN+ +++  Q+ SH +G P+A G
Sbjct: 371 SILNVNIFRQLQEDSHIDGQPIASG 395


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,204,613
Number of Sequences: 27780
Number of extensions: 243884
Number of successful extensions: 651
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)