Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l04f
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.43 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.3  
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    26   4.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   6.9  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   9.1  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    25   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +2

Query: 80   ISTRPLTTNPRFRPATEFLLAVTHHMTARPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQ 259
            I + P +  P+  P +  L        A P   VPP      + PP+ +  A+ PP+ V 
Sbjct: 978  ILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVP 1037

Query: 260  QAEDP 274
                P
Sbjct: 1038 STAPP 1042



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +2

Query: 164  RPHMEVPPTEVHQVEDPPMEVQQAEDPPMEVQQAEDPPMEVAIHMEAINIQVDR 325
            +P + VPP        PP+    A  PP+ V  A+ PP+  A   EA ++   R
Sbjct: 1202 KPSVGVPPVPPPSTA-PPVPTPSAGLPPVPVPTAKAPPVP-APSSEAPSVSTPR 1253


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +2

Query: 197  HQVEDPPMEVQQAEDPPMEVQQAEDPPMEV 286
            H V  PP+  Q A  P M       PPM V
Sbjct: 1685 HPVSTPPVRPQSAAPPQMSAPTPPPPPMSV 1714


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 499 CRLIHQC*ARMGWIRRENYLRKDCCHLRSVSFH 401
           C  + Q  A++ WIR    LR    H R++SFH
Sbjct: 748 CAWLSQMRAKL-WIRNGTTLRDQAHHYRNLSFH 779


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 439 ASNSHGGSNPYAPSTGGSGGKSPLD 513
           ++N++  S   APSTGG+  KS LD
Sbjct: 238 STNNYYSSPTMAPSTGGAKPKSDLD 262


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 1   SLVEGSHAAEPTQPKPMAPKPQTPT 75
           S +  + AA P +P  ++P+P +PT
Sbjct: 475 SSINSNRAASPFRPTSVSPQPSSPT 499


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +2

Query: 146 THHMTARPHMEVPPTEVHQVEDPPMEVQQAEDP 244
           TH+   R H E+        E+ P EV+Q E P
Sbjct: 318 THYRLIRQHPELEHVWEKLEEEAPREVKQIEQP 350


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 110 RFRPATEFLLAVTHHMTARPHMEVPPTEV 196
           R++PAT   L V  H    PH E P   V
Sbjct: 24  RYKPATSESLYVKGHYGPHPHKEHPAAYV 52


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/59 (23%), Positives = 22/59 (37%)
 Frame = -2

Query: 472 RMGWIRRENYLRKDCCHLRSVSFHREANFRHTTNFLRNCYCRRRGYALLTIHLDIDCLH 296
           +MG+   ++  + +  H  S   H E N  H      N  C     +L  +  D  C H
Sbjct: 518 KMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHH 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.303    0.125    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,908,724
Number of Sequences: 5004
Number of extensions: 32374
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 17 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)