Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12l02r
         (745 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    33   0.043
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.13 
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    30   0.40 
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    29   0.70 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   0.92 
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.1  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.1  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   3.7  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.7  
SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr ...    27   3.7  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   4.9  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 33.1 bits (72), Expect = 0.043
 Identities = 26/96 (27%), Positives = 46/96 (47%)
 Frame = -3

Query: 734 IPTSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTP 555
           +P + T    S++TI+SS+P+T+  +   +  T      +S    +    TT  T  ST 
Sbjct: 502 VPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTT-STS 560

Query: 554 INFGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSAT 447
           + + S  P TSS      S+ ++S     + CT++T
Sbjct: 561 VPYTS-TPVTSSNYTISSSTPVTSTPVTTTNCTTST 595


>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
 Frame = -2

Query: 711 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 544
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169

Query: 543 LQGSKD 526
            +  K+
Sbjct: 170 SKYIKE 175


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -2

Query: 360 VSWKLIALWENNKVYFKILNTERNQYLVLVVGTNWNG 250
           + +K I L++NN+   KILN  R    V+ VGT  NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 37/130 (28%), Positives = 56/130 (43%)
 Frame = -3

Query: 728 TSLTTFWRSSFTIASSSPITTVRLKRASIYTRRRRAKSSQMS*TN*YETTR*TAWSTPIN 549
           +SLT+   +S ++ASSS  T+  L  +SI +    + S   S      TT  +  S+  N
Sbjct: 107 SSLTSSSATSSSLASSST-TSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTN 165

Query: 548 FGSRAPRTSSGIVSQLSSDLSSPKTRLSLCTSATVSL*R*AMMFKATMADLPTATARTRQ 369
             + A  TSS   S LSS  +S     S   S++++         AT + L +  A    
Sbjct: 166 STTSATPTSSATSSSLSSTAASNSATSSSLASSSLNS---TTSATATSSSLSSTAASNSA 222

Query: 368 ARESAGS*SL 339
              S  S SL
Sbjct: 223 TSSSLASSSL 232



 Score = 26.2 bits (55), Expect = 4.9
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = -3

Query: 734 IPTSLTTFWRSSFTIASSSPITTVRLKRA-SIYTRRRRAKSSQMS*TN*YETTR*TAWST 558
           +PTS  TF  S F   S  P ++     + S         SS  + T+   T+   + ST
Sbjct: 677 VPTS--TFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTS---SVST 731

Query: 557 PINFGSRAPRTSSGIVSQLSSDLSS 483
           P++  S  P + S   S+LSS L+S
Sbjct: 732 PLSNSSAYPSSGSSTFSRLSSTLTS 756


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 457 VHKLNRVFGEDKSELNWETIPDDVL 531
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 702 QLYNSVVVADYDSAVEKSKHLYEEKKS 622
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 542 SRAPRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 441
           S  P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 567 SSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = -3

Query: 512 VSQLSSDLSSPKTRLSLCTSATV 444
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 630 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQ 538
           K+   +T+  NKL+ ++  +  +YAY L LQ
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQ 65


>SPBC31F10.03 |||ChaC-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 203

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -2

Query: 117 RTVEPSGHRMAWGYNGRVIGSPEHYAWGIKAF 22
           +T+ P G    +GY   +   P HY + I  F
Sbjct: 2   KTLSPEGSLWVFGYGSLIWHPPPHYDYSIPCF 33


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 223 AVDSEGHMVAVPVSADYQYQVLVTFSVQDLEVDLVVLPQS 342
           A+ + G  V  PV+  Y Y V   F    L +DL  +PQ+
Sbjct: 204 ALTTSGMSVHPPVTETYTYPVTEAFQGMFLGLDLEYVPQN 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,718
Number of Sequences: 5004
Number of extensions: 51467
Number of successful extensions: 220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)