Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k24r
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin pro...    80   2e-15
AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin (...    80   2e-15
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    31   1.00 
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical p...    27   9.3  

>L21758-1|AAA16827.1|  264|Caenorhabditis elegans osteonectin
           protein.
          Length = 264

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = -2

Query: 671 NDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERC 495
           +D+ VS HEL PI AP++ +E CI PFL+ CDA++D  +++ EWGKCL L E E++ERC
Sbjct: 206 HDKSVSHHELIPITAPVIPMESCIKPFLEGCDANNDGNISIKEWGKCLGLKEGEIQERC 264


>AF036692-3|AAB88325.1|  264|Caenorhabditis elegans Osteonectin
           (sparc) related protein1 protein.
          Length = 264

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 32/59 (54%), Positives = 45/59 (76%)
 Frame = -2

Query: 671 NDRFVSRHELFPIRAPLMALEHCIAPFLDRCDADDDHRVTLAEWGKCLELDELEMEERC 495
           +D+ VS HEL PI AP++ +E CI PFL+ CDA++D  +++ EWGKCL L E E++ERC
Sbjct: 206 HDKSVSHHELIPITAPVIPMESCIKPFLEGCDANNDGNISIKEWGKCLGLKEGEIQERC 264


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -2

Query: 668 DRFVSRHELFPIRAPLMALEHCIAPFLDRC-DADDDHRVTLAEWGKCLEL-DELEMEERC 495
           D  +S+ EL PI       E C+  F+D C D   D  +++ EW  C    D+L  E  C
Sbjct: 93  DGKLSKAELRPIERG--GNEACVEEFIDMCDDMVVDGSISVDEWCDCFTFSDDLRHEPPC 150

Query: 494 DDFNENAEHYL 462
                + + +L
Sbjct: 151 HKAKHDVDPHL 161


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -2

Query: 671 NDRFVSRHELFPIRAPLMA---LEHCIAPFLDRCDADDDHRVTLAEWGKCL 528
           ++  + R E  P ++ L+    +  C       CD + D ++T  EW KC+
Sbjct: 185 HNNVLERSEWKPFKSVLLEWKNVRQCSRNLFKTCDLNKDRKLTFDEWRKCI 235


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 611 EHCIAPFLDRC-DADDDHRVTLAEWGKCLEL-DELEMEERCDDFNENAEHYL 462
           E C+  F+D C D   D  +++ EW  C    D+L  E  C     + + +L
Sbjct: 118 EACVEEFIDMCDDMVVDGSISVDEWCDCFTFSDDLRHEPPCHKAKHDVDPHL 169


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -2

Query: 527 ELDELEMEERCDDFNENAE 471
           E+++LE E RC   NENAE
Sbjct: 193 EIEKLETEMRCQKMNENAE 211


>Z81109-11|CAB03254.2|  318|Caenorhabditis elegans Hypothetical
           protein R10D12.11 protein.
          Length = 318

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 21/91 (23%), Positives = 38/91 (41%)
 Frame = +1

Query: 109 IFLTYLFHVSILMIKFFF*LVL*SIFTFNFHYTIFYSKDKVIIKSLLQNRLKCTFSTYEY 288
           IFLT +   +++  +F+F L+  ++    FH  + Y    +I        L     T +Y
Sbjct: 52  IFLTDIILFALIAPRFYFPLIAGTMHGIFFHIGVPYDVQTIIGFGTGVGMLSACIQTIQY 111

Query: 289 NIIFCA*MKTEKYLSK*ERLILFIKIVFYFL 381
                  +     L++  R+  F+  V YFL
Sbjct: 112 R--HSKIVPPNSILARSSRIKAFLNFVRYFL 140


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,872,513
Number of Sequences: 27780
Number of extensions: 229893
Number of successful extensions: 482
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)