Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k24f
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    31   0.12 
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|...    29   0.50 
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.5  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   2.0  
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos...    27   2.7  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   2.7  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.5  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    26   4.7  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   6.2  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.2  

>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 31.1 bits (67), Expect = 0.12
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
 Frame = +1

Query: 325 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 504
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 505 AKY-TASDAYASTTLISAVV-RNTTTFKS 585
           ++Y    + YA  T  S +   N T FK+
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKA 212


>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -2

Query: 577 TWWYCGP--RH*SELSRHKHRWRYTSQSD 497
           T+WY  P  RH  E  +  H W Y+S  D
Sbjct: 44  TYWYPPPPPRHHKEHKKSHHHWEYSSDDD 72


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 372  CSAGRVCEINEHGDAMCNCIKDC 440
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 373 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 543
           A+  VSA +    TP V+++    +        + TS    + I+  T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289


>SPBC119.15 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/62 (24%), Positives = 30/62 (48%)
 Frame = -1

Query: 581 LNVVVLRTTALIRVVEA*ASLAVYFAIRLPGFVEVCAHHASGVCLVGTVLDAVTHGVSVF 402
           LN+ V +   +++++E  A    +  I  PG +E+    ASG  +  T+  +    ++  
Sbjct: 84  LNLFVTKFDQVLKILEKRAPTVDHILIDTPGQIEIFQWSASGSIICDTLASSWPTCIAYV 143

Query: 401 VD 396
           VD
Sbjct: 144 VD 145


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -1

Query: 404 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 225
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 224 VFSLRDVPAAELLRRWTFSS 165
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 278 FCLMVSLLVQALRHSVLDVFSLRD 207
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 388 SAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVRN 567
           S  S+++ +   T+  + P+  +       TS+  G  +   TASD  AS  +IS+   N
Sbjct: 53  STSSSSSSSSISTSHDSQPSTSSSSPSSTSTSSSSGTSVI--TASDVSASNEIISSSTNN 110

Query: 568 T 570
           +
Sbjct: 111 S 111


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = +1

Query: 421 VTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTTLISAVVR 564
           V   + +P +   ++W    S +P  R   Y       STT ++  VR
Sbjct: 206 VVTQKQIPNKMDMESWVKYMSLEPSKRGRIYDVLSLEVSTTKLAYYVR 253


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 452 CLVGTVLDAVTHGVSVFVDFADT-SC 378
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 283 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 414
           P+ +TF+  +L  R+  K  +W  L   S+ +  V  K+T  ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,198,329
Number of Sequences: 5004
Number of extensions: 38456
Number of successful extensions: 123
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)