Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k24f
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              44   1e-06
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    26   0.32 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    24   1.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    21   6.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.8  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   6.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 44.0 bits (99), Expect = 1e-06
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +3

Query: 354 PCLKVHCSAGRVCEINEHGD-AMCNCIKDCPYETDSRRMVCTNFNETWQSDCEVYRQRC 527
           PC   +C  G+ CE++ +   A+C C++ CP      R VC +  + + + CE++R  C
Sbjct: 81  PCASKYCGIGKECELSPNSTIAVCVCMRKCPRR---HRPVCASNGKIYANHCELHRAAC 136


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 384 RVCEINEHGDAMCNCIKDCPYETDSRRMVCTNFNET 491
           +VC    H D+ C C+       DS   V  NFNE+
Sbjct: 344 QVCRSRRHSDSCCLCL-------DSMNAVIRNFNES 372


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +3

Query: 375 SAGRVCEINEHGDAMCNCIKDCPYETDSRRMVC 473
           + G  C   EH       + DC  E  +RR +C
Sbjct: 296 TTGTKCVSGEHLSVSGGALNDCHAEVVARRCLC 328


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 559 PRH*SELSRHKHRWRYTSQS 500
           PR   ELS++   W +TS S
Sbjct: 33  PRPSFELSKNGDEWTFTSSS 52


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 219 QPPRCPRGR 193
           QPP+CPR R
Sbjct: 564 QPPQCPRFR 572


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 559 PRH*SELSRHKHRWRYTSQS 500
           PR   ELS++   W +TS S
Sbjct: 35  PRPSFELSKNGDEWTFTSSS 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,322
Number of Sequences: 438
Number of extensions: 2587
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)