Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k22r
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    28   0.38 
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    28   0.38 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    27   0.89 
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    26   1.2  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   2.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    25   2.0  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   2.7  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    24   4.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    24   4.7  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    24   6.3  
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S...    24   6.3  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    24   6.3  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    23   8.3  

>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 206 VDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDA 30
           V+   D  + E+N     + E+ETS  PPA+S ST   ++   + S++  +   L D A
Sbjct: 454 VEVHTDANSPEENNTPVTKKEVETS-KPPAVSGSTPPVNEAAVIESSNTLEKEPLSDVA 511


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 27.9 bits (59), Expect = 0.38
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 198 WIDLRFNETVSKIIHFQISFWNKSINRMRVDFQHS 302
           W++   N+TV++II       ++S+N M VDF+ S
Sbjct: 621 WVETEANDTVTEIISSDSESLSQSLN-MAVDFRQS 654


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -3

Query: 155  LEDELETSAPPPAISTSTNGFDDFVEVPSASAFD 54
            L+D      PP  ++   N   D+  +P+ S+FD
Sbjct: 2417 LKDAANYGLPPITMNVKVNDTGDYSNIPTVSSFD 2450


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 137 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 6
           +S  PP++  S N        P+ S +D NGL    P+GS   T
Sbjct: 187 SSGKPPSLHLSGNRRLSMGS-PTKSIYDQNGLTTPRPIGSDDLT 229


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 140 ETSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 6
           E    P   S +  GF+D+V  P++     + ++    L S+P+T
Sbjct: 348 EAGGSPSKSSPTRPGFNDYVNRPTSVMPSLSNMIVSPDLDSSPST 392


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 25.4 bits (53), Expect = 2.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 122 PAISTSTNGFDDFVEVPSASA 60
           P I +ST   +DFVEVP  SA
Sbjct: 203 PQIFSSTLYINDFVEVPGTSA 223


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -3

Query: 170 NQLAGLEDELETS--APPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPT 9
           N++  ++D L T      P   +   G +   ++PSAS  + +  L  +P G  PT
Sbjct: 375 NRIGSVDDLLNTRQFTSSPIGGSMPKGPNSIYKIPSASMVNLSSPLVTSPSGLNPT 430


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 25  NGASSNRPLASNADALGTSTKSSNPF 102
           N  S +    SN D  GTS+  S PF
Sbjct: 428 NSTSMDGVAVSNMDETGTSSAGSKPF 453


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 137 TSAPPPAISTSTNGFDDFVEVPSASAFDANGLLDDAPLGSTPTT 6
           TS PPP  STS+ G      + ++++   +  +      +TP T
Sbjct: 367 TSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVT 410



 Score = 23.4 bits (48), Expect = 8.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 137 TSAPPPAISTSTNG 96
           TS PPP  STS+ G
Sbjct: 313 TSTPPPPASTSSTG 326


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 260  PKAYLKMDDFGDSFVEPEVDPAADFLAREQNQLAG 156
            PKA  ++ D  DS V+ EVD +  + +++     G
Sbjct: 1798 PKAIFRLHDQDDSGVQLEVDRSVSWSSKDWTPFNG 1832


>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 272

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +3

Query: 15 SGSQWSIIQQTVSIKC*CTG 74
          S ++WS++++T+ +K  C G
Sbjct: 29 SVTEWSVLEETLLLKAICRG 48


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 140 ETSAPPPAISTSTNGFDDFVEVPSASA 60
           ET+APPP  + + +   +  + PSA A
Sbjct: 173 ETAAPPPQETPTKSADAELAKTPSAPA 199


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 227 DSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTNGF 93
           D    P      D L ++QN+      +   SAP   ISTSTN F
Sbjct: 112 DKIGNPAGLETVDALRQQQNE------QNNASAPRTGISTSTNSF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,345
Number of Sequences: 5004
Number of extensions: 24410
Number of successful extensions: 76
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)