Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fner12k22r
         (316 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    25   0.16 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.16 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   2.0  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.7  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       20   6.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    20   8.1  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 197 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 81
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 229 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 267


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.16
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 197 AADFLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFV 81
           A+D   R+   + GLE+E E +      S +  GFDD++
Sbjct: 319 ASDGWGRQIKLVEGLEEEAEGAITVELQSENIPGFDDYM 357


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 15/51 (29%), Positives = 22/51 (43%)
 Frame = -3

Query: 251 YLKMDDFGDSFVEPEVDPAADFLAREQNQLAGLEDELETSAPPPAISTSTN 99
           Y+  D +   F    + P    L  E   +  +ED LETS   P  S +T+
Sbjct: 236 YILPDPYNTKFFRYRITPE---LYSEHLVVPEIEDNLETSLFRPLSSEATD 283


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 4.7
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = -3

Query: 185 LAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVE 78
           L R Q     LED++E      ++     G D F +
Sbjct: 184 LGRFQTTSQNLEDDVEIKVQVESVIEFEPGLDSFTQ 219



 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = +2

Query: 68  HWVLRQNRQ 94
           HW+LR N Q
Sbjct: 798 HWILRSNVQ 806


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = -3

Query: 188 FLAREQNQLAGLEDELETSAPPPAISTSTNGFDDFVEV 75
           F ARE N     +   E   PP   +   + F++ VE+
Sbjct: 135 FAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENGVEI 172


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 260 PKAYLKMDDFGDSF 219
           PK Y+KM D G+SF
Sbjct: 236 PK-YIKMMDAGESF 248


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,554
Number of Sequences: 438
Number of extensions: 1653
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)